Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq14597 127 1e-24 >seq14597 Length=68166 Score = 127 bits (140), Expect = 1e-24 Identities = 175/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 91815 CCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA-CTGGAACAAAGTGGC 91873 ||||||| ||||||| ||| ||||||| ||||| | | | ||| || || | || | | Sbjct 41037 CCTGCAAGGAGGACTGCAAGATCATCACCGACACCG-CTGCCAAGCTCGAGCGCAGCGCC 40979 Query 91874 TTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTGCGCAACTCGGCACTG 91933 ||||||||||| || |||| || ||||| || || || |||||||| || || | ||| Sbjct 40978 TTCTACTGGGGCCCCCTGGGAGTGGAGGACGCCCACCGCATGCTGCGGGACGCGCCGCTG 40919 Query 91934 GGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTTCACGCTGTCGTATCAC 91993 ||||||| ||||| || || || | || ||||||||||| |||||| |||| || ||| Sbjct 40918 GGCAGCTACCTCATCCGCGACAGTCGCCAGAAGGACGTCTTCTTCACGTTGTCCTACCAC 40859 Query 91994 TCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACAAGCAATTTTCCTTGGCT 92053 || ||| || || || || | || || |||||| | || | || || |||| Sbjct 40858 GGCAAGAGCGGGCCGGTGAGCGTTCGCATCGACTACAAGAAGCAGAAGTTCTCGCTGGCA 40799 Query 92054 GG 92055 || Sbjct 40798 GG 40797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355937477035018