Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq27301 113 4e-20 seq33424 107 2e-18 seq15835 104 2e-17 seq12594 98.7 1e-15 >seq27301 Length=2015 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| |||||| ||||| || ||| Sbjct 1844 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 1785 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||||||| ||||| || ||||| |||||||| || || ||| || ||| Sbjct 1784 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCTTTG 1725 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 1724 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTCCCGGTCAGGGTC 1665 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 1664 TTCACAAAGATCTGCAT 1648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 139625 CCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT 139684 |||||| |||||||||| ||||| || ||||| ||||| |||||||| ||| || Sbjct 2015 CCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATCTTGGCC 1956 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || | | ||| | | ||| ||||||||||||| | ||| | ||||| ||||||| Sbjct 1955 TTGACATTTTCAATGGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGG 1896 Query 139745 GTTTTTACGAATATTTGCAT 139764 || || || || || ||||| Sbjct 1895 GTCTTCACAAAGATCTGCAT 1876 >seq33424 Length=445 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| ||| | |||| |||||| ||||| || ||| Sbjct 160 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 219 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||||||| ||||| || ||||| ||||| |||||||| ||| || || Sbjct 220 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 279 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 280 ACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTC 339 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 340 TTCACAAAGATCTGCAT 356 >seq15835 Length=21870 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || ||| | |||| ||||| ||||| || || Sbjct 233 GTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCG 174 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | |||||||| || || |||||||||||||| ||| || ||| Sbjct 173 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTC 114 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||| ||||| | ||| | |||||||| || | || Sbjct 113 ACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 54 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 53 TTAACGAAGATCTGCAT 37 >seq12594 Length=11963 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| || ||||| || ||| | |||| |||||| ||||| || ||| Sbjct 227 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCA 168 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||||||| ||||| || ||||| ||||| || || || ||| || || Sbjct 167 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 108 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | || ||| ||||||||||||| | ||| | ||||| || || | || Sbjct 107 ACGTTTTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTC 48 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 47 TTCACGAAGATCTGCAT 31 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 139576 TTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGAT 139635 ||| || |||||||| ||| | |||| |||||| ||||| || |||||| |||| Sbjct 632 TTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGAT 573 Query 139636 CAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC 139695 |||||| ||||| || ||||| |||||||| || || ||| || || | | ||| Sbjct 572 CAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTC 513 Query 139696 CACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | |||| ||||||||||||| | ||| | ||||| || |||| || || || || Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 139756 TATTTGCAT 139764 || ||||| Sbjct 452 GATCTGCAT 444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| |||||| ||||| || ||| Sbjct 412 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 353 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||||||| ||||| || ||||| ||||| |||||||| ||| || || Sbjct 352 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 293 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 | | ||| | |||| ||||||||||||| | ||| | ||||| || |||| Sbjct 292 ACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495641068235200