Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq34972 450 2e-121 seq8304 93.3 6e-14 >seq34972 Length=31405 Score = 450 bits (498), Expect = 2e-121 Identities = 1231/1865 (66%), Gaps = 33/1865 (2%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | |||||| || | || | || |||||||| || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 71260 AGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAG-AGATTCCCAATTCCAAA 71317 || || || || | || || ||| | ||| || || || || || |||| | |||| Sbjct 3217 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGC 3161 Query 71318 GATCCGATGG--TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 | || ||| | | | ||||| || || || || Sbjct 3160 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGG-ATGCCCTTGCTGACGGGAGA 3102 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||||| || || ||||| || || | |||| || || || |||||||| | || Sbjct 3101 GCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 3042 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 | | || |||| ||||| || | |||| || || || || ||| || || Sbjct 3041 GGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAA 2982 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 || ||| | ||| || || || || || || ||||| |||||||| || || || || Sbjct 2981 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 2922 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 2921 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTT 2862 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 || | ||| |||| ||||||||| |||| | ||||| ||| ||||| ||| Sbjct 2861 GTTCAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCG 2802 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 71731 || | || ||| ||| | |||| || |||||||| || || |||||||||| Sbjct 2801 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATC 2742 Query 71732 -TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || || || | |||||||| ||||| || || || |||||||||| || | | Sbjct 2741 GTGGCT--GGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 2684 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || ||||| || ||||| |||| || || || || || || || | || || |||||| Sbjct 2683 TTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTT 2624 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTA 71909 || |||| || || |||| || | ||| | | || ||||||| | | |||| | Sbjct 2623 TCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAA 2565 Query 71910 --TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 || | | ||||| | | ||||| | | ||||||||| || ||||| ||| Sbjct 2564 CTTCCCCTGCTTCTCATAGGAG--GTGTAGAGCTT--TTCGAACTCCTCCCCCCA-GCAC 2510 Query 71966 TG-TCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCATCATCATTTAC 72023 | || | || || || || || |||||||||| ||||| || || | || | || Sbjct 2509 TCATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTC-TCCAC 2451 Query 72024 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCT 72082 || ||||| || || || || ||||| || | || ||| || || |||| ||| |||| Sbjct 2450 TCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCT 2392 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 |||| ||||| || ||||| || || || ||||| | | | || | ||||| || | Sbjct 2391 CCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCT 2332 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 72202 ||| ||| ||||| | |||| || | ||||| || ||||| || | ||| | || | Sbjct 2331 CCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCG 2272 Query 72203 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 72262 |||| || |||||||||| ||| || | | || ||||| || ||||| |||| || Sbjct 2271 TGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGA 2212 Query 72263 TATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 | ||||| || | | | || ||| || | | ||| |||||||| || ||| | Sbjct 2211 TGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGG 2152 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 |||| | |||||| | || | ||| || || ||||| || || || || || ||||| Sbjct 2151 AGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGG 2092 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 || || || ||||| |||| || | | | ||||| || || || | || || | Sbjct 2091 CGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGG 2032 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 | ||||| || ||||| || || ||||| || |||||||||||||| |||| || || | Sbjct 2031 AGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGT 1972 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 || | || || || || | || | ||| | ||| ||||| |||| || | | | Sbjct 1971 CCATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTT 1912 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 || || || ||||||| |||||| |||| ||| || || || || ||||||| | Sbjct 1911 TGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 1852 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 | || |||| ||| |||| || |||| ||||| || || | | | ||| || | Sbjct 1851 AGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGT 1792 Query 72683 CCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 | | || | ||| || || || || || || ||||| || || | |||||| Sbjct 1791 CGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTG 1733 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | | ||||||||||| || || || | || || || || ||||| || ||||| ||| Sbjct 1732 TACAGGTCCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACG 1673 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATT 72861 || || | || || || ||||| || || || || | || || |||||| | || Sbjct 1672 GCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATC 1613 Query 72862 TCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACC 72921 || || ||||| ||||| | || || || || || || | || | || ||||| ||| Sbjct 1612 TCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACC 1553 Query 72922 TTCAT 72926 ||||| Sbjct 1552 TTCAT 1548 >seq8304 Length=64587 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 9293 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 9352 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || || |||| || || |||||||| | ||||||||||||||||||| Sbjct 9353 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 9412 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || ||| | || | || ||||| |||||||| Sbjct 9413 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670567003496560