Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq15835 82.4 8e-11 >seq15835 Length=21870 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| || | ||| | || || || ||||| |||||||| ||| Sbjct 264 GCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA 205 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| || || || || ||| ||||||| | |||||||| || || Sbjct 204 GAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGG 145 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || ||| | | || | ||||| |||| || || Sbjct 144 AATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGAC 85 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| || | || || ||||| || ||||| Sbjct 84 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506582132197920