Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq34972 131 2e-25 seq25594 84.2 3e-11 >seq34972 Length=31405 Score = 131 bits (144), Expect = 2e-25 Identities = 348/528 (66%), Gaps = 24/528 (5%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| || | || || ||||| ||| | ||||| | | |||| Sbjct 2220 ACCAACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGT 2279 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || | ||||| || | ||| | ||| |||| || ||| Sbjct 2280 TACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTTGCCATGTACCTGGAGCCCTGG 2339 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| |||||||| | ||| | || ||| | || || ||| || Sbjct 2340 CACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGA 2399 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||||||| | || || | || ||| | || || ||||||||||| | || | Sbjct 2400 GCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 2459 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||||| | ||||| || ||||| ||| || || || || ||| || ||| Sbjct 2460 AACGAGG------ACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGGATGAGTGC 2513 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG 97157 ||||| || ||||| || ||| ||||| |||| ||| | |||| || | | Sbjct 2514 TGGGGGGAGGAGTTCGA---AAAGCTCTACACCTCCTATGAGAAGCAGGG--GA-AGTTC 2567 Query 97158 AGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACT 97214 | || || | | || | | ||||| | ||| | | | | ||| ||| ||| Sbjct 2568 AAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACT 2627 Query 97215 GGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTG 97274 || || || ||||| || ||||| || || || | || |||||||||| | || Sbjct 2628 GGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTG 2687 Query 97275 GGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 |||||||||||| | ||| || ||||| |||||| | |||||| || Sbjct 2688 GGCACCATCAAGTCCAGCAACCTCTGCACAGAAATTATCGAGTACACC 2735 >seq25594 Length=9440 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || || || || |||||||||||||| || || || || |||||||||||| Sbjct 4861 GTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGG 4802 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||| | ||||| ||||| || || || || |||||| | || ||| || Sbjct 4801 CTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGAT 4742 Query 125550 GAGG 125553 |||| Sbjct 4741 GAGG 4738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740427391452560