Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq17722 132 3e-26 >seq17722 Length=45798 Score = 132 bits (146), Expect = 3e-26 Identities = 126/160 (79%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||| || || || ||||||| ||||| Sbjct 8206 GCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGCACCCCGAGACCCATA 8147 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || || | |||||||||||||||||| ||||| |||||| |||||| |||||||| Sbjct 8146 TCACCA-GAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCACACGTAGAACTGACA 8088 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 || ||||| ||| || || ||||| || ||| || |||| Sbjct 8087 CAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGTCAGGTCT 8048 Score = 123 bits (136), Expect = 2e-23 Identities = 136/179 (76%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| |||||||| || || || | |||||||||||| || ||||| ||||| ||||| Sbjct 6477 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 6418 Query 25833 TCCATCTTCCC----TGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGG 25888 || || || | |||| |||||| || |||| |||| | ||| ||||||| Sbjct 6417 GCCTTCCTCTCGATCTGTG----AAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGG 6362 Query 25889 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 25946 ||||||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 6361 CGTCCCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 6303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339854857006038