Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq20209 136 6e-27 seq7377 136 6e-27 seq5443 86.0 9e-12 >seq20209 Length=49103 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || |||||| || ||||| ||||| || |||||||| |||| ||| Sbjct 38913 TTGACGATGTCGAAGCCCACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGCGAG 38854 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| | || ||||||| ||| | ||| || Sbjct 38853 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 38794 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||||||||| |||||||| ||||||| | || | ||| | ||||| Sbjct 38793 TCCCCAAAGATGGCGTTGGTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACG 38734 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||| || || || | || || | || || ||||| || ||||||| Sbjct 38733 GCGTCGACGTGCCCATAGAACTCCTCCAGCACTGCTGCCATTTCTTTCTCTCCTG 38679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || ||||| || || || || ||||| || || || | | |||||||| | Sbjct 37794 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCC 37735 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | | ||| |||||| | || || | | |||| |||| | | | ||||| | Sbjct 37734 GTCACCACGGAGTTGTTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGG 37675 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || || Sbjct 37674 AAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGG 37615 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || ||||||||||| || | || ||||| ||||| | |||| | || |||| Sbjct 37614 TTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTT 37556 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 37555 ATAGCCGCTCAGGTGCTGCACGTA 37532 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 9676 TTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGA 9735 |||| || || ||||| | ||||||||| | |||||||| || ||||||||||| || Sbjct 36881 TTCAACACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGG 36822 Query 9736 CCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCG 9795 || || |||||||| || ||||| || || ||||| | || | ||||| || | Sbjct 36821 CCGGGGACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGA 36762 Query 9796 GGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCA 9855 ||||| ||| ||||| || || || || || | |||||||||| || || || Sbjct 36761 GGAGGGTAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACACCTCTCCATCC 36702 Query 9856 ATAATCTG 9863 | || ||| Sbjct 36701 AGAACCTG 36694 >seq7377 Length=53025 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || || || | ||| ||| | |||||||| Sbjct 18940 GGACACCACTTGGTGTTGAGGCACACCAGCTTCTTCAAAGTGGCAGTTTTGACGATATTG 18999 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 19000 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 19059 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| |||||||| ||||| || ||||| |||| ||| | || |||||||| ||||| Sbjct 19060 GCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATA 19119 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | || || | ||||| | || | |||| ||| ||||||| ||| || ||||| Sbjct 19120 CCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCA 19179 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 19180 CCGTAGAG 19187 Score = 134 bits (148), Expect = 2e-26 Identities = 191/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 ||||| |||| || | | ||||||| ||| |||| || || || || | | Sbjct 32927 GGAACATGGAAGTCGACGTATGGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAA 32986 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 || | | | |||||||| || ||| ||||| || ||||||||||| |||||||| Sbjct 32987 GTGGAAGTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAC 33046 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | |||||||||||| ||| ||| ||||| || ||||| || ||||| |||| ||| Sbjct 33047 TCAGGGGAGCAGATGGGGTTTCCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCC 33106 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | || |||||||| || | ||||||||| | || |||| || || |||| ||| Sbjct 33107 ACCATACTCTCACCAAACAGTCTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAG 33166 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||||| ||| || ||||| ||||| || Sbjct 33167 AACTCCAAAGCATCTATGTCACCGTAGAG 33195 >seq5443 Length=98092 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || ||||||||||| ||||||||| | || || || || || Sbjct 82628 CAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGT 82687 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| || || || || || |||| ||| | |||||||| || || | Sbjct 82688 TTCCCAGGAGGCCTTTAAGAGAGAAGGGGGCGCCCATCTCTATCATGCTCTCTCCAAATA 82747 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | |||| || || || | ||| || || ||||| || |||| Sbjct 82748 TGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAAAATTCAACAGCATCAATGT 82807 Query 8931 CTCCGTA 8937 | ||||| Sbjct 82808 CACCGTA 82814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707920729468640