Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19590 190 3e-44 seq42242 187 4e-43 seq28710 187 4e-43 seq13757 187 4e-43 seq18959 178 2e-40 seq40819 159 5e-35 seq34348 131 3e-26 seq62738 116 6e-22 seq29975 84.2 3e-12 >seq19590 Length=14611 Score = 190 bits (210), Expect = 3e-44 Identities = 203/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| ||||||||||| || || || Sbjct 1169 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 1110 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || ||| ||||||| |||| Sbjct 1109 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTTTGATCTATGAGGAGAC 1050 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 1049 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACCGA 990 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 989 GCACGCAAAAAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 930 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| || || ||| | ||| Sbjct 929 CCGCACCCTTTACGGCTTCGGAGGATAA 902 >seq42242 Length=1384 Score = 187 bits (206), Expect = 4e-43 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||||| ||||||||||| |||||||||||||| ||||| Sbjct 217 CGCAAAGCGTCACCGTAAAGTCCTTCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 276 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| ||||||||||| |||||| |||| || || |||| || |||| Sbjct 277 CCGCCGTTTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 336 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| || |||| |||||| || ||| ||||| Sbjct 337 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAATGTGATCCGTGATGCCGTCACCTACACCGA 396 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| || | ||||| || ||| |||||||| | || ||||| |||| Sbjct 397 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAA 447 >seq28710 Length=3421 Score = 187 bits (206), Expect = 4e-43 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 3235 CGCAAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 3176 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||||||||| |||||| |||| || || |||| || |||| Sbjct 3175 CCGCCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 3116 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| || |||| |||||| || ||| ||||| Sbjct 3115 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAATGTGATCCGTGATGCCGTCACCTACACCGA 3056 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| || | ||||| || ||| |||||||| | || ||||| |||| Sbjct 3055 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAA 3005 >seq13757 Length=3595 Score = 187 bits (206), Expect = 4e-43 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 132 CGCAAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 191 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||||||||| |||||| |||| || || |||| || |||| Sbjct 192 CCGCCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 251 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | ||||| ||| || |||| |||||| || ||| ||||| Sbjct 252 CCGCGGTGTGTTGAAGGTGTTCCTGGAGAATGTGATCCGTGATGCCGTCACCTACACCGA 311 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| || | ||||| || ||| |||||||| | || ||||| |||| Sbjct 312 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAA 362 >seq18959 Length=13487 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| ||||||||||| || || || Sbjct 2464 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 2523 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 2524 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 2583 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 2584 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACCGA 2643 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 2644 GCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 2703 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 2704 CCGCACCCTGTACGGCTTCGGAGGTTAA 2731 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | || || ||||||||||| |||||||| || || || ||| Sbjct 12556 GCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACTAAACCCGCCATC 12615 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 12616 CGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACC 12675 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||||| Sbjct 12676 CGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACCGAG 12735 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||| ||| |||||||| | || || || |||| | || ||| Sbjct 12736 CACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGGC 12795 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 12796 CGCACCCTGTACGGCTTCGGAGGTTAA 12822 >seq40819 Length=12879 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||| || || || || Sbjct 10635 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGGATCACTAAACCCGCCAT 10694 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 10695 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 10754 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| |||||| || ||| ||||| Sbjct 10755 CCGCGGTGTGCTCAAGGTGTTCTTGGAAAACGTGATCCGTGATGCCGTCACCTACACCGA 10814 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 10815 GCACGCAAAAAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 10874 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| || ||| | ||| Sbjct 10875 CCGCACCCTGTATGGCTTCGGAGGATAA 10902 >seq34348 Length=4962 Score = 131 bits (144), Expect = 3e-26 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||||||||| ||||| Sbjct 1063 CGCAAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 1122 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||||||||| |||||| |||| || || |||| || |||| Sbjct 1123 CCGCCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 1182 Query 16552 TCGTGATGTTTTGAAGATCT 16571 ||| ||| |||||| ||| Sbjct 1183 CCGTTGTGTGTTGAAGGTCT 1202 >seq62738 Length=3362 Score = 116 bits (128), Expect = 6e-22 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 16501 GGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGT 16560 |||||| ||||||||||| |||||| |||| || || |||| || |||| || | ||| Sbjct 2726 GGCTCGCCGTGGTGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACCCGCGGTGT 2667 Query 16561 TTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAA 16620 |||||| | ||||| ||| || |||| |||||| || ||| ||||||||||| || Sbjct 2666 GTTGAAGGTGTTCCTGGAGAATGTGATCCGTGATGCCGTCACCTACACCGAGCACGCCAA 2607 Query 16621 ACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 | ||||| || ||| |||||||| | || ||||| |||| Sbjct 2606 GAGGAAGACCGTGACCGCCATGGATGTGGTGTATGCTCTGAA 2565 >seq29975 Length=33802 Score = 84.2 bits (92), Expect = 3e-12 Identities = 143/209 (68%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||| ||||||| || |||||||| || || ||||| | |||||||| || ||| Sbjct 1982 CTCCGTGATGACATCCAGGGGATCACCAAACCCGCCATCCGCCAGCTGGCTCGCCGCGGT 2041 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||| |||| | || |||| || |||| || | ||| | ||| ||| Sbjct 2042 GGA----------TCTCCTGTCTGATCTACGAGGAGACCCGCGGTGTGCTAAAGGGTTTC 2091 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| | | ||||| || || ||| ||| ||||||||||| || | ||||| || Sbjct 2092 CTGGAGAACATGATCCAGGACGCCGTCCCCTACACCGAGCACGCCAAGAGGAAGACGGTG 2151 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| || | ||| | || |||| Sbjct 2152 CCCGCCATGTATGTGGTCCACGCTCTGAA 2180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79012838776758