Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq34972 468 6e-127 seq8304 84.2 3e-11 >seq34972 Length=31405 Score = 468 bits (518), Expect = 6e-127 Identities = 1228/1860 (66%), Gaps = 23/1860 (1%) Strand=Plus/Minus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 62454 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 62511 | || || || | |||| | ||| || || || || || |||| | |||| | Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 3160 Query 62512 GATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 62570 | || | || | | | | | || || || || ||| || || Sbjct 3159 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACT-GCAGGATGCCCTTGCTGACGGGAGAG 3101 Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 3100 CCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 3041 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 ||| || |||| |||||||| | |||| || || || || ||| || || Sbjct 3040 GCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAAC 2981 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62750 || ||| | ||| || || || ||||| || ||||| || ||||| || || || || Sbjct 2980 GGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTG 2921 Query 62751 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62810 || | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 2920 TGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTG 2861 Query 62811 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62870 || | ||| |||| ||||||||| |||| | |||||| ||| ||||| || Sbjct 2860 TTCAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCGC 2801 Query 62871 TCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 62925 || | || ||||||| | |||| || |||||||| || || |||||||||| Sbjct 2800 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCG 2741 Query 62926 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 62985 | || | || | || || || ||||| || || || ||||||| || || | || Sbjct 2740 TGGCTGGTG--TACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 2683 Query 62986 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 | ||||| || ||||| |||| || || || || || || ||| |||| || ||||||| Sbjct 2682 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTT 2623 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTAT 63104 | |||| || || |||| || | ||| | | || ||||||| | | ||| | Sbjct 2622 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAAC 2564 Query 63105 CTCCTTTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 ||| || ||| |||| || || | ||||||||| || ||||| | | Sbjct 2563 TTCCC--CTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCAT 2506 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 ||| || || || || | |||||||||| ||||| || ||| || ||||| | Sbjct 2505 CCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 2446 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCG 63281 |||| || || || || ||||| || | || ||| || || |||| ||| || ||||| Sbjct 2445 TCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCC 2387 Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 ||||| || ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 2386 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 2327 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || ||||| | |||| || | ||||| || ||||| || | ||| | || ||||| Sbjct 2326 TACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTG 2267 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || |||||||||| ||| || | | ||||| || | || ||||| |||| ||| ||| Sbjct 2266 TTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAG 2207 Query 63462 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63521 || || | | | || || || | | ||| |||||||| || ||| ||||| Sbjct 2206 CTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATG 2147 Query 63522 AATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGT 63581 | |||||| | || | |||||| || || || || ||||| || || ||||| || Sbjct 2146 AGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 2087 Query 63582 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63641 || || ||||| |||| || | | | ||||| || || || | || || || ||| Sbjct 2086 AGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCG 2027 Query 63642 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701 || || ||||| || || || || || |||||||||||||| |||| ||| || ||| Sbjct 2026 TGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC 1967 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 | || || || || | || | ||| | ||||||||| |||| || | | ||| | Sbjct 1966 TTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 1907 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 || || ||||||| |||||| |||| ||| || || || || ||||||| || || Sbjct 1906 TTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 1847 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATG 63881 |||| ||| |||| || |||||||||| || || | | | ||| || || | Sbjct 1846 TCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGC 1787 Query 63882 GTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 63940 || | ||| || || || || || || ||||| || || | |||||| | | Sbjct 1786 GT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAG 1728 Query 63941 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 64000 ||||||||||| || || || | || || || || ||||| || ||||| ||||| || Sbjct 1727 GTCCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 1668 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 64060 | || || || ||||| || || || || | || || |||||| | || || || Sbjct 1667 CCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGC 1608 Query 64061 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||| ||||| | || || || || || || | || | || || || |||||||| Sbjct 1607 AGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCAT 1548 >seq8304 Length=64587 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 9293 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 9352 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 9353 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 9412 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || || ||| | || | || || || |||||||| Sbjct 9413 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622416090790960