Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq15835 104 2e-17 >seq15835 Length=21870 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || | | | Sbjct 37 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGC 96 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| ||||| ||||||||||| || || || ||||| Sbjct 97 GACACTATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 156 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | |||||| || || ||||||| | | | | || |||||| ||| Sbjct 157 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 216 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || || ||||||| || ||| | || || ||||| Sbjct 217 ATCCAAAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| | || | || | | | Sbjct 6240 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 6299 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| || || ||||| || || || || || Sbjct 6300 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 6359 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| | | | | || |||||| ||| Sbjct 6360 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 6419 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||||||||| ||||||| |||||| | || || || || Sbjct 6420 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 6466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478254304404320