Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq34972 147 6e-30 >seq34972 Length=31405 Score = 147 bits (162), Expect = 6e-30 Identities = 502/776 (65%), Gaps = 30/776 (4%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| || ||||| | |||||| |||| Sbjct 2019 TTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGC 2078 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||||| ||||| |||||| || || | ||||| || ||| | Sbjct 2079 TGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAA 2138 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || ||||| || || ||||| ||||| |||| || | | | Sbjct 2139 TGCGCCCTCATCTCCAAATCAGCCGGGGGAATCGGTGTGGCGAT----AAGCTGCAT--- 2191 Query 363727 CAGAACA-------GTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCAT 363779 ||||||| | ||||| |||||| || |||| || ||| | || ||||| Sbjct 2192 CAGAACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGGTCGTCCCCAT 2251 Query 363780 GCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || | |||| || || | |||||||||||||| || ||| | ||| Sbjct 2252 GCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGCGGCAACAAGAGACCAGG 2311 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 || ||||| ||||| || ||||| || ||||| | ||||| || || ||||| Sbjct 2312 AGCCTTTGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAA 2371 Query 363900 GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 ||| ||||| ||||| ||||| | | || | || || ||||| | || ||| | | Sbjct 2372 GAAGAACACCGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATCCC 2431 Query 363960 TGACCATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACG 364018 |||| || |||||| | |||||| ||| || | ||||| || | || || ||| Sbjct 2432 CGACCTGTTCATGAAGAGAGTGGAGAGCA-ACGAGGACTGGTCTCTGATGTGTCCCAACG 2490 Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTA 364076 | || ||||| || || ||||| || || | | |||||| || || Sbjct 2491 AGTGCCCAGGGCTGGATGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACAC--CTCCTA 2548 Query 364077 TGAATCGGAGGGAAAG-----GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCC 364131 ||| | |||| ||| || ||| | || || ||| || | ||| ||| Sbjct 2549 TGAGAAGCAGGGGAAGTTCAAGCGCGT-GGTGAA----GGCTCAGCAGTTGTGGCACGCC 2603 Query 364132 ATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 | || || || |||| || || || || || || ||| |||||||||| | |||||| Sbjct 2604 GTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAAC 2663 Query 364192 CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATT 364251 | ||| |||||| ||| | || || || || || |||||||| || || || ||| Sbjct 2664 AGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATT 2723 Query 364252 ATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || || |||||| | ||| ||| || || || || || || || || ||||| Sbjct 2724 ATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGCAATCTGGCCTCAATTGCGCT 2779 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||||||||| || || || |||||||| || |||||||||| | ||||| | Sbjct 3225 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCC 3284 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || |||||||| |||| | | || || Sbjct 3285 TACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCT 3344 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || |||| || || | || | ||||||||| | || ||||||||| | | Sbjct 3345 CATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAGAACCAGCTG 3404 Query 364930 ATCGC 364934 ||||| Sbjct 3405 ATCGC 3409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302214613137092