Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq34972 466 2e-126 seq8304 93.3 5e-14 >seq34972 Length=31405 Score = 466 bits (516), Expect = 2e-126 Identities = 1278/1944 (66%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 62366 | || || || | |||| | ||| || || || || || |||| | |||| | Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 3160 Query 62367 GATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 62425 | || | || | | | | | || || || || ||| || || Sbjct 3159 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACT-GCAGGATGCCCTTGCTGACGGGAGAG 3101 Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 3100 CCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 3041 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 ||| || |||| |||||||| | |||| || || || || ||| || || Sbjct 3040 GCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAAC 2981 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 || ||| | ||| || || || || || || ||||| || ||||| || || || || Sbjct 2980 GGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTG 2921 Query 62606 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 || | ||| || || |||| ||||| || | ||||| || ||||| || || | || Sbjct 2920 TGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTG 2861 Query 62666 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 || | ||| |||| ||||||||| |||| | |||||| ||| ||||| || Sbjct 2860 TTCAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCGC 2801 Query 62726 TCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT-- 62780 || | || ||||||| | |||| || |||||||| || || |||||||||| Sbjct 2800 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCG 2741 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 | || | || | || || || ||||| || || || |||||||||| || | || Sbjct 2740 TGGCTGGTG--TACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 2683 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | ||||| || ||||| |||| || || || || || || ||| |||| || ||||||| Sbjct 2682 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTT 2623 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTAT 62959 | |||| || || |||| || | ||| | | || ||||||| | | ||| | Sbjct 2622 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAAC 2564 Query 62960 CTCTTTTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63017 || || ||| |||| || || | ||||||||| || ||||| | | Sbjct 2563 TTCCC--CTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCAT 2506 Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || || || || | |||||||||| ||||| || ||| || ||||| | Sbjct 2505 CCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 2446 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCG 63136 |||| || || || || ||||| || | || ||| || || |||| ||| || ||||| Sbjct 2445 TCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCC 2387 Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 ||||| || ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 2386 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 2327 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || ||||| | |||| || | ||||| || ||||| || | ||| | || ||||| Sbjct 2326 TACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTG 2267 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || |||||||||| ||| || | | || ||||| | || ||||| || | ||| ||| Sbjct 2266 TTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAG 2207 Query 63317 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 || || | | | || || || | | ||| |||||||| || ||| ||||| Sbjct 2206 CTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATG 2147 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 | |||||| | || | ||| || || ||||| || || || || || ||||| || Sbjct 2146 AGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 2087 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 || || ||||| |||| || | | | ||||| || || || | || || || ||| Sbjct 2086 AGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCG 2027 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 || || ||||| || || || || || |||||||||||||| |||| ||| || ||| Sbjct 2026 TGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC 1967 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616 | || || || || | || | ||| | ||||||||| |||| || | | ||| | Sbjct 1966 TTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 1907 Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676 || || ||||||| |||||| |||| ||| || || || || ||||||| || || Sbjct 1906 TTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 1847 Query 63677 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 63736 |||| ||| |||| || |||||||||| || || | | | ||| | || | Sbjct 1846 TCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGC 1787 Query 63737 GTAATACTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAA 63795 || | ||| || || || || | || ||||| || |||| |||||| | | Sbjct 1786 GT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAG 1728 Query 63796 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 63855 ||||||||||| || || || | || || || |||||||| || ||||| ||||| || Sbjct 1727 GTCCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 1668 Query 63856 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 63915 | || || || ||||| || || || || | || || |||||| | || || || Sbjct 1667 CCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGC 1608 Query 63916 TGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||| ||||| | || || || || || || | || | || ||||| |||||||| Sbjct 1607 AGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCAT 1548 Query 63976 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 64035 | || | ||||| | |||| ||| | || || || | || || || Sbjct 1547 GGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCG 1488 Query 64036 AGATGTGATTTTATCAAACATGAC 64059 | | |||||||| || |||||||| Sbjct 1487 ACAGGTGATTTTGTCGAACATGAC 1464 >seq8304 Length=64587 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || || |||||||||||||| || || || || | || || || | Sbjct 9293 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 9352 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 9353 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 9412 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 9413 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633091781197600