Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq15835 107 2e-18 seq12594 87.8 2e-12 >seq15835 Length=21870 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || || || |||| || || || || ||| | Sbjct 37 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGC 96 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || || || ||||| || || ||||| || ||||| Sbjct 97 GACACTATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 156 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| ||||||| |||||| Sbjct 157 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 216 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || |||||| | ||| | || |||| || | ||||| Sbjct 217 ATCCAAAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 263 >seq12594 Length=11963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 31 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 90 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| || || || || |||||||| || || || || || Sbjct 91 GACTCAATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 150 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | || || |||||| ||||||| |||||| Sbjct 151 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGTCGCACCCTCTCCGACTACAAC 210 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 211 ATCCAGAAAGAATCCACC 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419379096640390