Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq15835 172 1e-37 seq33424 152 9e-32 seq27301 145 1e-29 seq12594 138 2e-27 >seq15835 Length=21870 Score = 172 bits (190), Expect = 1e-37 Identities = 166/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 6903 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 6844 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 6843 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 6784 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| ||| |||||||| |||| || || |||| ||||||||| || Sbjct 6783 TCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCCAGGGTGATGGTCTTG 6725 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| |||||||| Sbjct 6724 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6696 Score = 168 bits (186), Expect = 1e-36 Identities = 165/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| || |||||||| || |||||||| || | |||||||| | Sbjct 6675 CAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 6616 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || || || || ||||||||||||||||| || | Sbjct 6615 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 6556 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTT 68432 |||| || || ||| ||| |||||||| |||| ||| || |||| ||||||||| || Sbjct 6555 TCTTGGCTTTCACGTTCTCAATGGTGTC-GCTGGGTTCAACCTCCAGGGTGATGGTCTTG 6497 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| |||||||| Sbjct 6496 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6468 Score = 165 bits (182), Expect = 1e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || |||||||| ||||||||||| || |||||| Sbjct 263 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 204 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || || || || || || ||| Sbjct 203 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 144 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||| ||||| || ||||| || || ||| ||| || ||||| |||| || || Sbjct 143 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTC-GCTGGGCTCGAC 85 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 84 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || ||||| |||||||| || |||||||| || | |||||||| | Sbjct 6447 CAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCA 6388 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || || || || || ||||| || |||||||||||||| || || | Sbjct 6387 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGA 6328 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| || ||| |||||||| |||| || || |||| ||||||||| || Sbjct 6327 TCTTGGCCTTAACATTCTCAATGGTGTC-GCTGGGCTCGACCTCCAGGGTGATGGTCTTG 6269 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| |||||||| Sbjct 6268 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6240 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || |||||||| || |||||||| || || ||| Sbjct 6238 CCTCCTCTCAGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 6179 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || || || ||||| || ||| Sbjct 6178 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 6119 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||||||||| || ||||| ||||| ||| ||| |||||||| |||| || || Sbjct 6118 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGAC 6060 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||| || || |||||||| Sbjct 6059 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6012 >seq33424 Length=445 Score = 152 bits (168), Expect = 9e-32 Identities = 172/229 (75%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||| | || || ||| |||| || || |||||||| || ||||||||||| |||| Sbjct 132 TCCTCTGAGACGGAGCA----CAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGG 187 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || ||||| | |||||| || || || || || | || ||||| || | Sbjct 188 AGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAG 247 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||| || |||||||| ||||| ||||||||| || ||| |||| | || | Sbjct 248 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCA 307 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| ||||||||| ||||| || |||||||| || || |||||||| Sbjct 308 CCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || ||||| || || ||||||||||| || || ||||| |||||||| || |||||| Sbjct 7 TGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTG 66 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | || || |||| ||||||||| ||||| || |||||||||||||| |||||| Sbjct 67 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGC 126 Query 68460 AT 68461 || Sbjct 127 AT 128 >seq27301 Length=2015 Score = 145 bits (160), Expect = 1e-29 Identities = 173/233 (74%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||| | || || ||| |||| || || |||||||| || |||||||| || |||| Sbjct 1872 TCCTCTGAGACGGAGCA----CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1817 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || ||||| | |||||| || || || || || | || ||||| || | Sbjct 1816 AGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAG 1757 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||||||||| || || ||||| || ||||| || |||||||| | || | Sbjct 1756 GGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCA 1697 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||||||||| || || || |||||||| || || ||||||||| || Sbjct 1696 CCTCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 1644 >seq12594 Length=11963 Score = 138 bits (152), Expect = 2e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 68273 TTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 ||| ||||||||||| |||||||| || | || ||||| | |||||| || || || || Sbjct 632 TTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGAT 573 Query 68333 GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392 || | || ||||| || || ||||||||||| || || ||||| ||||||||| || Sbjct 572 CAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTC 513 Query 68393 GATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 ||| |||| | || || |||| ||||||||| ||||| || |||||||| || || Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 68453 TATCTGCAT 68461 |||||||| Sbjct 452 GATCTGCAT 444 Score = 89.7 bits (98), Expect = 9e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | |||||| | || || | || | || || |||||||| || |||||||| | Sbjct 772 TTTACTGTCCTCCTCTGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGT 713 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | |||||||| || | |||||||| | |||||| || || || || || | || |||| Sbjct 712 AGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGT 653 Query 68347 CGGGTGGAATGCCTTCCTT 68365 | || || ||||||||||| Sbjct 652 CTGGAGGGATGCCTTCCTT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920836647782320