Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq34972 486 4e-132 seq8304 113 9e-20 seq13328 96.9 7e-15 seq7495 96.9 7e-15 seq25594 87.8 3e-12 seq39959 86.0 1e-11 >seq34972 Length=31405 Score = 486 bits (538), Expect = 4e-132 Identities = 1087/1602 (68%), Gaps = 60/1602 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||| ||||||| || | |||| Sbjct 3421 GACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCT---CTCTCC 3365 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | |||||||||||| || || || | ||| Sbjct 3364 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGG 3305 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | |||||| ||| |||||||||| ||||| || ||| Sbjct 3304 GTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 3245 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| ||||||||||||||||| |||| | Sbjct 3244 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG------GATGGCG 3191 Query 244247 AGTCTGAGCTCGTTC--CAG-TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 | ||| ||| ||| ||| | ||| | || || || | | || ||||| Sbjct 3190 A-TCTT--CTCCTTCAGCAGCTTCCA---GTCCAGCAGTTCGGTGGGCTTCTTCTCCCAC 3137 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| ||||||| | |||||||||||||| ||| |||| ||| |||||| ||| Sbjct 3136 ATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCG 3077 Query 244364 TCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 || | | |||||||| |||||| | || |||||||||| |||||||| ||||||||| Sbjct 3076 A-GCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGAT 3018 Query 244423 CATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 | |||| | || | |||| || ||| ||| | ||| | |||||| Sbjct 3017 TTGAATATTCA-GCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGG 2959 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| || || ||||| || || || || ||||| ||||||||||| | Sbjct 2958 CATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCG 2899 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||||||||| || || |||| ||||| |||||||| | || | ||| | | Sbjct 2898 CTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTT 2839 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | | || |||| | |||||| | || ||| | || ||||| Sbjct 2838 TGGTCACAGACG-CCAGTTTTTTAAAGTCAAA-----AG---TCCGCTCCGG-GGTGA-- 2791 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | || |||||| || | |||||| ||||| || || ||||| || | || Sbjct 2790 ----CGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTGGCTG 2735 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||| || ||||||||||| ||| |||||||||||||||| | ||| || Sbjct 2734 GTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGG 2675 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | ||| || || || |||| Sbjct 2674 TTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGG 2615 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGC-CTTGCCCTC 244899 | ||| ||| || ||| | | | |||||| ||| | || | ||| |||| Sbjct 2614 GACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGC-GCTTGAACTTCCCCTG 2556 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| ||| |||||| || |||||||| |||||| ||| || || || || Sbjct 2555 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCTGG 2496 Query 244960 GCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 |||| || ||| ||||| ||| ||| || || | || || |||| |||||| | Sbjct 2495 GCACT-CGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 2437 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 ||||||||||||| ||| | | ||| |||||||||| |||||||| ||| || |||| Sbjct 2436 GGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGT 2377 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| | ||||||| |||||||| |||||| ||||||||||||||| ||| | || | Sbjct 2376 TCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAA 2317 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATG 245197 ||| || || | ||||||||| |||||||| || | | | || | |||| | | Sbjct 2316 AGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTG-TTGTTGTAAACT 2258 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | || || | ||||| |||| |||||||||||| ||||||| ||| | Sbjct 2257 CTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT 2198 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 |||| | ||| || | || || | ||| ||||| ||||||||||||||||| Sbjct 2197 GTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCAT 2138 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | ||||| ||||| || |||||||| |||||| |||||| |||||| Sbjct 2137 TGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAG 2078 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| || | | | | |||||| || |||||| ||||||||| || Sbjct 2077 CTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 2018 Query 245438 TAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | | ||| || || | |||||||| | |||||||||| |||||| Sbjct 2017 CA-CTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGAT 1959 Query 245497 CTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGT 245551 | | || ||| |||||||| ||||||| || ||| | || | || || Sbjct 1958 CCCGACGG-ACACTCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTGCCGTTG 1904 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| | || |||||| ||||| || |||||||| || ||| Sbjct 1903 ATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAG 1862 >seq8304 Length=64587 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 5233 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 5292 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 5293 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 5352 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 5353 CTGTTCCTCACACCATGCCT 5372 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 6198 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 6257 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 ||| ||| ||||||||||||||||||||||||| | ||| ||||| ||| Sbjct 6258 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 6311 >seq13328 Length=1460 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 531 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 590 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 591 CGTGGGCGAGTACCAG 606 >seq7495 Length=4655 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 916 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 975 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 976 CGTGGGCGAGTACCAG 991 >seq25594 Length=9440 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || ||||||||||||||||| ||| | ||||| ||||||| ||| Sbjct 4861 GTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGG 4802 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| ||| ||| | ||||| || || |||| ||| ||||| || || || |||| Sbjct 4801 CTCAAGAAGAGAGGACT-AATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGA 4743 Query 42827 CGAGG 42831 |||| Sbjct 4742 TGAGG 4738 >seq39959 Length=24422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||||||| | || |||||| |||||| | | |||||| || ||||| || ||| Sbjct 23851 GACAGGACCACGACTATTGGACAGCTGATCAGCGCTTACCTGGAGAAGAAGAGTGACCTG 23792 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 || || ||| || ||||| |||||||| || |||||||||||| Sbjct 23791 GAGGACCACACAGTGCACCTGCTGTTCTCTGCAAACCGATGGGAA 23747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943534080006560