Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq11419 95.1 1e-14 seq15835 86.0 5e-12 >seq11419 Length=14738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| |||| |||| |||| Sbjct 3733 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGG 3792 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 3793 AACCATAACTGATTTAATGAGCCATTCG 3820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| |||| |||| |||| Sbjct 3733 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTGAGAGCGATCAAAGG 3792 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 3793 AACCATAACTGATTTAATGAGCCATTCG 3820 >seq15835 Length=21870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||| ||||| || ||| |||||| || |||||||| || | Sbjct 263 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 204 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||||||||| ||||| | ||||||||| || Sbjct 203 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 144 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 143 ATGCCTTCTTTGTCC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396732337661212