Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15835 150 4e-31 seq27301 149 1e-30 seq12594 145 2e-29 seq33424 132 1e-25 >seq15835 Length=21870 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || |||||||| || ||||||| ||| ||||| || ||| Sbjct 248 AGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 189 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||| ||| |||||| || |||||||| Sbjct 188 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCTTTG 132 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || ||||||||||| || |||| ||||| | || || ||||| ||||| Sbjct 131 TCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATG 72 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| ||||| |||||||| Sbjct 71 GTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || ||||| | || || || || ||| Sbjct 6658 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 6599 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| ||| |||||| || ||||| || |||||||| || ||||||||| Sbjct 6598 ATCAGCCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACG 6542 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | ||| || || || ||||| ||||| || || || ||||| Sbjct 6541 TTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTA 6482 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 6481 ACGAAGATCTGCAT 6468 Score = 123 bits (136), Expect = 6e-23 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | || |||||| ||||| || |||| Sbjct 6470 CATG-CCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGT 6412 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| || ||||| | || || || || |||||||| | ||| || | Sbjct 6411 CGGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---T 6355 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || ||||| ||||||||||| || || || || || || || | ||||| | Sbjct 6354 CTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCGCTGG 6295 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 6294 GCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6240 >seq27301 Length=2015 Score = 149 bits (164), Expect = 1e-30 Identities = 178/239 (74%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || ||||| | ||| || || ||||| || |||| Sbjct 1878 CATG-CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 1820 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| |||||||| | || ||||| || |||||||||||||| || | Sbjct 1819 CGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGG---T 1763 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||| ||||| ||||||||||| || ||||| || ||||| || | || || | Sbjct 1762 CTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGG 1703 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || | ||||| |||||||||||||| ||||| || || ||||||||| || Sbjct 1702 GCTCCACCTCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 1644 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||||||||| || ||| ||||| || ||||| |||||||| || Sbjct 2015 CCAGCAAAGATCAGACGCTGCTG---GTCTGGAGGGATGCCCTCTTTGTCCTGGATCTTG 1959 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || ||||| || || || || | || || || || ||||| ||||| |||||| Sbjct 1958 GCCTTGACATTTTCAATGGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTC 1899 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||| Sbjct 1898 AGGGTCTTCACAAAGATCTGCAT 1876 >seq12594 Length=11963 Score = 145 bits (160), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| ||| ||||| |||||||| | || ||||| || || Sbjct 222 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAA 163 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || ||||| ||| || || ||||||||||| || || || || Sbjct 162 GATCAGACGCTGCTGG---TCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGAC 106 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || || || || | || || || || ||||| ||||| || || || ||||| Sbjct 105 GTTTTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTT 46 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 45 CACGAAGATCTGCAT 31 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 || ||| ||||| |||||||||| ||| ||||| |||||||| | || ||||| || || Sbjct 635 TTATTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAA 576 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || ||||| ||| ||||| ||||||||||| || || || || Sbjct 575 GATCAGACGCTGCTGG---TCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGAC 519 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 518 GTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTT 459 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 458 CACAAAGATCTGCAT 444 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || ||||| | ||| || || ||||| || |||| Sbjct 446 CATG-CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 388 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| |||||||| | || ||||| || |||||||||||||| || | Sbjct 387 CGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTG---GT 331 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || ||||| || ||||| || || || |||||||| || || || | Sbjct 330 CTGGAGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGG 271 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || || ||||| ||||| || ||||| || Sbjct 270 GCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGT 234 >seq33424 Length=445 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || ||||| | ||| || || ||||| ||||||| Sbjct 126 CATG-CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGT 184 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| |||||||| | || ||||| || |||||||||||||| || | Sbjct 185 CGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTG---GT 241 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| || ||||| || ||||| || || || |||||||| || || || | Sbjct 242 CTGGAGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGG 301 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 302 GCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| ||||||||||| || || || || ||||| || | || || | || Sbjct 19 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCC 78 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 79 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178623512553668