Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq34972 170 2e-37 seq8304 89.7 6e-13 >seq34972 Length=31405 Score = 170 bits (188), Expect = 2e-37 Identities = 833/1303 (64%), Gaps = 38/1303 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| |||||||||||| Sbjct 3301 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 3242 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 3241 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 3182 Query 114062 TTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 || || | |||||| | |||| | | | || | || |||||| || |||| | Sbjct 3181 TTCAGCAGCTTCCAGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGCA 3124 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 |||| || | | | | || || || | | |||||||| ||||| | | |||| Sbjct 3123 GGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCA 3064 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 ||| |||||||||| ||||| ||||| || || | ||| || || || ||||| Sbjct 3063 GCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCA 3004 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 || ||||| | | || |||| | || | || || ||||||| | ||||| Sbjct 3003 GCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTT 2944 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 114359 |||| || | ||||| || | || | | | || |||||| || ||| |||| Sbjct 2943 GGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGAT 2884 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | | || | ||||| ||| | || | ||| ||| || || || || | || || Sbjct 2883 AGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCA---CA-GAC 2828 Query 114420 GCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 || ||| ||| |||||| | || ||| |||| ||| | || || ||| Sbjct 2827 GCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCGCAATT 2771 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || |||||||| ||||| | |||||| | |||||||| |||||||| || || Sbjct 2770 GAGGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAG 2711 Query 114536 AAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 114593 | || || ||| | |||||||||| |||| ||| || ||| |||| || || | Sbjct 2710 AGGTTGCTGGACT--TGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGT 2653 Query 114594 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA-G 114652 | ||||| |||||||||||||| || || || || ||||||| || || || | ||| Sbjct 2652 CTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACA 2593 Query 114653 ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 114712 || | | | || ||| | ||| ||||| || ||| || |||||||| Sbjct 2592 ACTGCTGAGCCT-TCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGC 2534 Query 114713 GCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGA 114772 ||| ||||| || ||| | ||| |||||||| || | || || | ||| Sbjct 2533 TTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCTGGGCACTCGTTGGGACACATCAGA 2474 Query 114773 GACCATTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 ||||| | || | | ||| || | ||||||||| ||||| |||||||| || | Sbjct 2473 GACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGT 2416 Query 114831 AGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 114889 |||| || |||| | | ||| || | | || || || | ||||| ||| Sbjct 2415 AGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTTAGCTCCAGGAAG 2357 Query 114890 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACG 114945 || | | || |||||||| || |||||||||| || | | || || | | Sbjct 2356 TCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTG 2297 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 || |||||| || || | || ||| || | || | ||||| || | || || Sbjct 2296 -CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCC 2238 Query 115006 ATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGAT 115062 | || | ||| || || || ||| | | || | ||||| || | | || Sbjct 2237 GTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT-GTTCTGATGCAGCTT--AT 2181 Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122 || ||| || ||||| || | || ||||| | ||||| | | | || || |||| Sbjct 2180 CGCCACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTA 2121 Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCT 115182 || || ||||| ||| | || | |||| ||||||||||| |||| |||||||| Sbjct 2120 AATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCT 2061 Query 115183 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 || || ||||||||||| || || | |||||| ||||| Sbjct 2060 GTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 2018 >seq8304 Length=64587 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| || |||||||| Sbjct 5266 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 5325 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| || ||||| Sbjct 5326 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 5357 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| ||| |||||||||| || ||||| |||| ||| || | | | |||||| Sbjct 6185 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 6242 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| |||| || || ||| |||| || || |||||||| |||||||||||||| Sbjct 6243 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 6302 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 114654 || || || || || || | || || || | ||| || Sbjct 6303 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596844311254480