Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq27301 118 1e-21 seq33424 102 9e-17 seq36061 87.8 2e-12 seq23321 87.8 2e-12 seq13269 87.8 2e-12 seq12594 84.2 2e-11 seq10542 82.4 8e-11 >seq27301 Length=2015 Score = 118 bits (130), Expect = 1e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||| | ||| | ||| |||||| || || ||||| || | Sbjct 1874 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1815 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| ||||| || || || ||||||||||| | || Sbjct 1814 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 1755 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||| ||| ||| || ||||| | | | ||||| || | ||||| Sbjct 1754 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCACC 1695 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| || || || || ||||| |||||||| |||||||| || Sbjct 1694 TCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGAC 1642 >seq33424 Length=445 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||| | ||| | ||| |||||| || || || || || | Sbjct 130 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 189 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| ||||| || || || ||||||||||| | || Sbjct 190 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 249 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 42160 | || ||| ||||| ||| || |||| ||| || | |||| || | ||||| Sbjct 250 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGCTGTCACTGGGCTCCAC 308 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 309 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 >seq36061 Length=41405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || || | |||||||||| |||||||||||||| |||| || |||||||||| Sbjct 20029 TTACTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGAAAGGC-GAAATACTCACCA 19971 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 19970 CTATACTAACGAGGA 19956 >seq23321 Length=21996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8438 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8379 Query 57067 TACTACCGAGGATTGAATATATA 57089 ||||| |||||| | ||||||| Sbjct 8378 TACTAACGAGGAAGGGATATATA 8356 >seq13269 Length=32093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| || |||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 29709 AAAAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 29768 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 29769 TGTCCACTATACTAACGAGGA 29789 >seq12594 Length=11963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| || | || || || |||| || |||||||| ||||| || Sbjct 221 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAG 162 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | || |||||| ||| ||| || |||| | Sbjct 161 ATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTT 102 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | | ||| || | ||||| || | |||||||| || || || || ||||| || Sbjct 101 TCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTCACG 42 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 41 AAGATCTGCAT 31 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||| | ||| | ||| |||||| || || ||||| || | Sbjct 442 CCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 383 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| ||||| || || || ||||||||||| | || Sbjct 382 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 323 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 42160 | || ||| ||||| ||| || |||| ||| || | |||| || | ||||| Sbjct 322 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGCTGTCACTGGGCTCCAC 264 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | |||||||| || || || || || Sbjct 263 CTCCAGGGTGATGGTCTTTCCAGTCAGGGT 234 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 || || || || || || | || || || |||| || |||||||| ||||| || || Sbjct 631 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGATC 572 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 || ||||||||||| | || | || ||||| ||| ||| || |||| ||| | Sbjct 571 AGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTTTC 513 Query 42141 ACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 42199 | | |||| || | ||||| || | |||||||| || || || || ||||| ||||| Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 42200 GATTTGCAT 42208 ||| ||||| Sbjct 452 GATCTGCAT 444 >seq10542 Length=10943 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||| || | | |||||||||| ||||| |||||||||||||||| ||| Sbjct 3803 GAAAAATA--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 3746 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||| |||||| Sbjct 3745 CTGTCCACTATACTAACGAGGA 3724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542749670347040