Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq34972 223 3e-53 seq8304 95.1 1e-14 >seq34972 Length=31405 Score = 223 bits (246), Expect = 3e-53 Identities = 1029/1608 (64%), Gaps = 51/1608 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| ||| ||||| | ||||| | |||| Sbjct 1854 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 1913 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||||| || |||| ||| | || || ||||||| ||| ||| Sbjct 1914 GTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGTCCGTCGGGATCCACAAGATGGAC 1973 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | ||| | | | || || ||| | || ||| ||| ||| || Sbjct 1974 ATCGACGCAGCCATTGAGA-CGTACA---ACCTGCTGTCAGAGAAGTGGTTCACCCACGC 2029 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | |||| || || |||||||| || ||| ||||||| |||| || |||||| | Sbjct 2030 CTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCT 2089 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | || | |||| |||| || |||| ||||| || ||| | || || ||| Sbjct 2090 CGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCAT 2149 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTG----CCAGGGGTT 94069 ||| |||| || ||||||||||| ||| | | | | | | | | ||| Sbjct 2150 CTCCAAATCAGCCGGGGGAATCGGT----GTGGCGATAAGCTGCATCAGAACAACGGGGA 2205 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| |||| ||||||||| ||||||| ||||| | || | || Sbjct 2206 GCTACATCGCCGGCACCAACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACA 2265 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| |||| || ||||| |||||||| || | ||| || | || || | | Sbjct 2266 ACAACACGGCACGTTACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTTGCCATGT 2325 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||||| |||||| | ||| | || || |||||| ||| | Sbjct 2326 ACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAA 2385 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | |||| ||||| ||||| ||||||| || ||| | || ||||| || |||| Sbjct 2386 AGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGA 2445 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | || |||| ||| | |||| ||| | |||||||| || || || || ||| Sbjct 2446 AGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGG 2505 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || || || | || ||| | | || | || || |||||| ||| Sbjct 2506 ATGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGT 2565 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGA-TCAG--ATCGTGGACGTACAGGTGG 94486 || | || || | ||| | || ||||| | | | |||| | | ||| | Sbjct 2566 TCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCC---CAGACAG 2622 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 | || || ||||| ||||| ||| ||| ||| | |||| ||| |||||| ||| Sbjct 2623 AAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGA 2682 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || |||||| | || || ||||| || ||| ||||||| || | | Sbjct 2683 ATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATTATCGAGTACACCAGCCACG 2742 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| || |||| ||| || | || || | || || | || Sbjct 2743 ATGAGGTAGCGGTGTGCAATCTGGCCTCAAT--TGCGCTCAACAT--GTACGTCACCCCG 2798 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTC 94725 || ||| || || | | | || | | || | ||| || ||| Sbjct 2799 GAGCG--GACT------TTTGACTTTAAAAAACTGGCG-TCTGTGACCAAAGTAATCGTC 2849 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 ||| |||||| ||| ||||| | |||| ||| || || || || ||||| || || Sbjct 2850 AAGAATTTGAACAAGGTCATCGAAATTAACTACTATCCAGTGCCCGAAGCGGAAAAGTCC 2909 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| | || |||| || || || |||||||| ||||| ||||| || | | | Sbjct 2910 AACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTC 2969 Query 94846 ATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGC 94905 |||||| || | ||| || || | ||||| | | || ||||| | Sbjct 2970 ATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCC 3029 Query 94906 ATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964 || || ||| ||| | || | | | | | | ||||| | || ||| || | Sbjct 3030 ATCTACCACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCCGAGCTCGGCCCCTA 3085 Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 ||| ||| | || || ||| | ||||||| | |||| |||| | |||| Sbjct 3086 CGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAA 3145 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGAT-GTTATCAAACACG 95080 ||||||| | | ||| |||| ||||||| || | | | ||| | ||| |||| Sbjct 3146 GAAGCCCACCGAACTGCTGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCATC---CACG 3201 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 | |||| ||| ||||| ||||||| ||||||||||||||||| || |||||||| | Sbjct 3202 GCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGG 3261 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 ||||||||||||| ||||| ||| |||| |||| | |||| | | |||| ||| ||| Sbjct 3262 GCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCG 3321 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || || | || ||||| || || || ||||||||| || ||||| Sbjct 3322 GAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 3381 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 | || || | |||||||| ||| | ||| | |||||| ||| | ||| Sbjct 3382 GCGAGGAGATGAAGAACCAGCTGAT-CGCTCACAACGGGTCCATTCAG 3428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 |||||||||||||| ||||| | | | || || ||| | || ||| |||||||| Sbjct 1464 GTCATGTTCGACAAAATCACCTGTCGCATCCAGAAGCTGTGCTACGGACTGAACTCTGAC 1523 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 ||||||||||| | | || ||||||||| |||| ||||| | || ||| ||||| Sbjct 1524 TTCGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACC 1583 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || |||||||| ||||| || |||| ||| | | || || ||||| Sbjct 1584 ACCGTGGAGCTCGACACGCTGGCTGCTGAGATCACCGCCACTCTCACAACTAAGCACCCC 1643 Query 93511 GACTACTCCATTTTGGCTGCTCGAATC 93537 |||||| |||| | ||||| || ||| Sbjct 1644 GACTACGCCATACTCGCTGCACGGATC 1670 >seq8304 Length=64587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 5369 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATC 5310 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || | | |||| |||| | |||| | | |||||||| Sbjct 5309 CTGGGCAACAACGAGTCCATTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTC 5250 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 5249 TCGGGAGAGTTTCAGGTCAGCA 5228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494301411367760