Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq34972 167 2e-36 seq27301 100 3e-16 seq15835 95.1 1e-14 seq12594 84.2 2e-11 >seq34972 Length=31405 Score = 167 bits (184), Expect = 2e-36 Identities = 904/1428 (63%), Gaps = 44/1428 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| ||||| ||||| || || || || |||| || || Sbjct 3295 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 3236 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA-ATGTCGTCCTTCAA 153193 ||||| |||| || || |||| || |||||| | | | || | ||||||| Sbjct 3235 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAG 3177 Query 153194 CGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC 153253 | || ||| ||| ||| | | || || | ||||||||||||||| | | || Sbjct 3176 CAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCC 3117 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCG-TCGCGTTGGGCCAGTTCGC 153312 ||| ||||| ||| || |||| |||| |||| | || |||||| |||| Sbjct 3116 CTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCG-GCGGCCAGCTCGC 3058 Query 153313 AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 |||| ||||| || ||| | | ||| |||| ||| |||||| |||| || | | Sbjct 3057 AGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAG 2998 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | |||| ||| ||| |||| |||| || | ||||| || |||| ||| |||| | Sbjct 2997 CCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGC 2938 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATA 153487 | | || || || | || || |||| | ||| ||| || | ||||| Sbjct 2937 CAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGC-----ACTGGATA 2883 Query 153488 GTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAG 153547 || || ||||| | ||||| | || || | ||||| || | | | || Sbjct 2882 GTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGACGCCAG 2823 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGC 153607 ||| | || ||| | ||| || || | | ||| | || | ||||| || || Sbjct 2822 TTTTTTAAAGTCAAAAGTCCGCTC--CGGGGTG-ACGTACATGTTGAGCGCAATTGAGGC 2766 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 |||||| || || || ||| ||| | | |||||| | || || | ||||||||| Sbjct 2765 CAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAGAGGTT 2706 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 |||| | || ||| ||||| ||| || || ||||| || | ||||| ||||||||| | Sbjct 2705 GCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 2646 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG---CAGGTC 153784 |||||||| || ||| || || || | | |||||| || || | Sbjct 2645 CAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCACAACTG 2589 Query 153785 CTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCT 153843 ||| || |||| ||| || | |||| |||| || ||| || | Sbjct 2588 CTGAGCCTTCACCACGC-GCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTT 2530 Query 153844 CAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACC 153903 | ||||| || || |||| || | || || || |||| | ||||||||||| |||| Sbjct 2529 CGAACTCCTCCCCCCAGCACTCATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACC 2470 Query 153904 ACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGA 153963 | |||| | | || | ||||||||| || || | ||| || |||| | | Sbjct 2469 AGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAA 2410 Query 153964 GGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATA 154021 |||| | || | ||| |||||| || |||| || || | || | | | | Sbjct 2409 GGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAA 2352 Query 154022 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCC 154078 | ||||||||||||||| || | ||| | ||| | ||| ||| | | || ||||| Sbjct 2351 CACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCC 2292 Query 154079 CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC 154138 ||| ||||||| || || | |||||| | || | || |||||| | | ||| | | Sbjct 2291 CTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGA 2232 Query 154139 GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCC 154198 | |||||||||| ||| | ||| || || ||||||| ||| |||| Sbjct 2231 GTTGCCGTTGGTGCCGGCGATGTAGCTCCC-----CGTTGTTCTGATGCAGCTTATCGCC 2177 Query 154199 A-----ATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 | || || ||| | | || || ||| ||||| | |||||| ||| ||| Sbjct 2176 ACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATG 2117 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313 || |||||||| ||||| | | |||||| ||| || ||| || || || Sbjct 2116 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 2057 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 ||||| || ||||| ||||| ||||| || ||| || | || || | | Sbjct 2056 GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 1997 Query 154374 TACGTTTCGATGGCGTCTTCGATAT-CATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 ||||| || ||||| | ||||| | |||| ||| || |||| | || | |||||| Sbjct 1996 TACGTCTCAATGGCTGCGTCGATGTCCATC-TTGTGGATCCCGACGGACACTCTCATGAG 1938 Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 |||||||||||| || ||||| ||| | || |||||||| || || Sbjct 1937 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA 1890 >seq27301 Length=2015 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 1875 GCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1816 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || || || || || | | |||| |||||||| ||||| ||||| Sbjct 1815 GAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 1756 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| || ||| | | ||| | |||||| | | |||||| Sbjct 1755 GATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCAC 1696 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || ||||| || || ||||| |||||||| Sbjct 1695 CTCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 1648 >seq15835 Length=21870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | ||| | | | ||||||||||| |||||||||||| Sbjct 264 GCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA 205 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || || || |||| | |||| || | ||| || || || || Sbjct 204 GAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGG 145 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || ||| | | || | |||||| | | ||| || Sbjct 144 AATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGAC 85 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | || || ||||| || || || || || ||||||||| || Sbjct 84 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATGCCT 33 >seq12594 Length=11963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 443 GCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 384 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || || || || || | | |||| |||||||| ||||| ||||| Sbjct 383 GAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 324 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| || || | | ||| | | |||| | | |||||| Sbjct 323 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCAC 264 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||| | || | || || |||||||| ||| Sbjct 263 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495839299084320