Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq34972 118 1e-21 seq12594 93.3 4e-14 seq8304 87.8 2e-12 >seq34972 Length=31405 Score = 118 bits (130), Expect = 1e-21 Identities = 485/747 (65%), Gaps = 32/747 (4%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||||||||| |||| ||| || | | Sbjct 3361 AGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTG 3302 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | |||| ||||||||||| || || ||||| || || | Sbjct 3301 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 3242 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 || || ||||| |||| ||||| ||| ||||||||||| | ||||| ||| Sbjct 3241 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 3182 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | || || | | |||| | | || ||||| | | | | ||||||| Sbjct 3181 TTCAGCAGCTT----CCAGTCCAGCAGT--TCGGTGGGCTTCTTCTCCCACATGTCGTAC 3128 Query 146281 TGCATAGTGCC---GCGGAACAGGGGGCTATTCT-CGTACGATTCATAAGGACCGTCGAT 146336 |||| |||| || || | | || || |||||| || || || ||| | | Sbjct 3127 TGCAGGATGCCCTTGCTGACGGGAGAGC----CTGCGTACGTCTCGTAGGGGCCGA-GCT 3073 Query 146337 CTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | |||||| |||||||| || ||||| || | ||| |||| ||| ||| || Sbjct 3072 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATT-TGA 3014 Query 146396 AGTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTC 146453 | | || ||| ||||| | ||| ||| | ||| || || | || | ||||| || Sbjct 3013 ATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCATC 2955 Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT--ACTGTTC-GCAGC 146510 || | ||| || | || | |||| || | ||| |||||| ||| ||| || | Sbjct 2954 CGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTC 2895 Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570 | ||| ||| ||||| ||| | ||||||| |||||| | ||| |||| | ||| Sbjct 2894 GG--GCACTGG-ATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTT 2838 Query 146571 CGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTT 146630 |||| | ||| | ||||||| || | | ||||| || |||| Sbjct 2837 GGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCGC---TCCGGGGTGACGTACATGTT 2781 Query 146631 GACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAAT 146690 || || || ||||||| || || || || ||| || | | | |||| | ||| Sbjct 2780 GAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAAT 2721 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTT 146750 || | ||||||||||||| |||||||| |||||| ||| | |||||| || | |||| Sbjct 2720 TTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTT 2661 Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||| ||| ||||| |||||||| || Sbjct 2660 GCAGGCGTCTTTGTACAGCATGTATGG 2634 >seq12594 Length=11963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| ||| | |||||| || || ||||| |||||| Sbjct 227 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCA 168 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| ||||||||||| ||| ||| || |||| Sbjct 167 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 108 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | | ||| | ||| || || | ||| | || || || || || || Sbjct 107 ACGTTTTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTC 48 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 47 TTCACGAAGATCTGCATGCCT 27 >seq8304 Length=64587 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 6201 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 6260 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCG 146790 || | ||||||||| |||||||||||||||||| || ||||||||| Sbjct 6261 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 6311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475095399905440