Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq34972 147 2e-30 seq8304 95.1 1e-14 seq15835 89.7 5e-13 >seq34972 Length=31405 Score = 147 bits (162), Expect = 2e-30 Identities = 434/663 (65%), Gaps = 11/663 (2%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || ||||| |||||||| ||||||||||||||||||||||| | ||| || Sbjct 2622 GAAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAG 2681 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 || |||| || || || | || || || ||| | ||||||||||| |||| | | Sbjct 2682 AATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATTATCGAGTACACCAGCCAC 2741 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACGG 123784 ||| | || || ||||| ||| |||| || | ||||| | || | |||| | ||| Sbjct 2742 GATGAGGTAGCGGTGTGCAATCTGGCCTC-AATTGCGCTCAACATGTACGTC-ACCCCGG 2799 Query 123785 CG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 | ||||| | || ||| || | || ||| | || |||||||||| Sbjct 2800 AGCGGACTTTTGACTTTAAAAAACTGGCGTCTGTGACCAAAGTAATCGTCAAGAATTTGA 2859 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| | ||||| |||| | ||||| || |||||| ||| || | | Sbjct 2860 ACAAGGTCATCGAAATTAACTACTATCCAGTGCCCGAAGCGGAAAAGTCCAACAAGCGCC 2919 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 |||| ||| | ||| | ||| | ||||| ||||| || || || | | |||| | Sbjct 2920 ACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACC 2979 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 ||| ||||||| | || || || |||| |||| ||||| ||| | || || ||| Sbjct 2980 CGTTCGAAAGCAAAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACG 3039 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGG 124080 ||| |||||||||||||||| || || | |||| | ||||| | ||||| | Sbjct 3040 CCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAG 3099 Query 124081 GCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140 || || | ||| || || ||||||||||||||||| | | || || | Sbjct 3100 GCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCACCGAAC 3159 Query 124141 TGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCT 124198 || |||||||| | | || | | | |||| | ||||| || | ||| || Sbjct 3160 TGCTGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCATCCACGGCGTGAGGAACAGCCT 3217 Query 124199 GTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTT 124258 | || |||| ||||| ||||| |||| || || || | || |||||||| ||| | Sbjct 3218 GCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCAT 3277 Query 124259 CGA 124261 ||| Sbjct 3278 CGA 3280 >seq8304 Length=64587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || |||||| | || ||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 6328 ATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAGGACGCCTGCAAC 6269 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || |||| || || |||| || ||||| ||| | || || Sbjct 6268 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATC 6209 Query 123708 ATCGAATACA 123717 | || |||| Sbjct 6208 GTAGAGTACA 6199 >seq15835 Length=21870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || ||| ||||| || || || ||||||||||| || || ||| Sbjct 266 ATGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 207 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||| || || || || | |||| | ||||| || || Sbjct 206 GAGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGG 147 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| || || || || ||| | || | || | |||||| | ||| Sbjct 146 GGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCA-CGTTCTCAATAGTGTCGCTGGGCTC 88 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || ||||| || || || || || || || ||||| Sbjct 87 GACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451617833371760