Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq20209 116 5e-21 seq7377 111 2e-19 seq5443 100 4e-16 >seq20209 Length=49103 Score = 116 bits (128), Expect = 5e-21 Identities = 202/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || ||||| | || ||||| || || | | | | || ||||||| | | Sbjct 37789 CCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCCGTCAC 37730 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | ||| |||||| | || || |||| || |||| || | ||| | ||| Sbjct 37729 CACGGAGTTGTTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGGAAAGT 37670 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||||| || || |||||||| Sbjct 37669 ATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGGTTCTG 37610 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| |||||| | ||| |||||||| | |||| ||||| || Sbjct 37609 GTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTTATAG 37552 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 37551 CCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 37502 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 9753 CTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCT 9812 |||||| |||| |||||||| | || | || || || |||| ||||||||||| Sbjct 36909 CTCGTCGTCCCAGTCCGGGTGGACCGCCTTCAACACGTCACACACCCGGTTGTGTTCTCG 36850 Query 9813 CAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCAC 9872 ||||| ||||||||||||||||| | || || || | || ||| | || | ||||| Sbjct 36849 TAGCCAGATGGTGGCGTACATCATCAGGCCGGGGACCAGGCCGAACGCCTCGTGGCCCAC 36790 Query 9873 TGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTT 9932 || ||||| || ||||| || | || | || |||| | || ||| || Sbjct 36789 AGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGGTAGTGCATGTCAACGCCCACCTCCTT 36730 Query 9933 GACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 || || |||||||||| || || || | |||||| Sbjct 36729 TACTGTTGGGGGATACACCTCTCCATCCAGAACCTG 36694 >seq7377 Length=53025 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || ||||| ||||| | || || || || || ||||||||||| ||||||||| Sbjct 18979 GTGGCAGTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAC 19038 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||||||||| ||| |||| || ||||||| ||| || ||||| |||| ||| Sbjct 19039 TCAGGGGAGCAGATGGGGTTTGCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCC 19098 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | || |||||||| ||||| || || || | |||||| | | | ||| | ||| Sbjct 19099 ACCATACTCTCACCAAAGATACCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAA 19158 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || | ||| || | ||| || ||||| Sbjct 19159 AACTCCAAAGCATCTATGTCACCGTAGAG 19187 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| ||||| | || || || || || ||||||||||| ||||||||| | ||| Sbjct 32993 GTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGG 33052 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||||||||| ||| ||| || || |||| ||| || ||||| |||| ||| | || Sbjct 33053 GAGCAGATGGGGTTTCCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATA 33112 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || | |||||| | ||| || | | || ||| | ||||| || Sbjct 33113 CTCTCACCAAACAGTCTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCC 33172 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| || ||||| Sbjct 33173 AAAGCATCTATGTCACCGTAGAG 33195 >seq5443 Length=98092 Score = 100 bits (110), Expect = 4e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || | |||||| ||||| || || || | || || ||||||||||| |||||||| Sbjct 82609 GTGGCAGATTTCACTATGTCAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAA 82668 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || || ||| ||| ||| ||||| | || || || || |||| ||| Sbjct 82669 TCTGGAGAACATATAGGGTTTCCCAGGAGGCCTTTAAGAGAGAAGGGGGCGCCCATCTCT 82728 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 || |||||||| || || ||||| || | || | | || | | || |||| ||| Sbjct 82729 ATCATGCTCTCTCCAAATATGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAA 82788 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 | ||| ||||| || | ||| || |||| | || | |||| |||||||||| Sbjct 82789 AATTCAACAGCATCAATGTCACCGTAGAATTCCTCAAGCTCGCGGGCTATCTCCT 82843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723110967600400