Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq34972 192 9e-44 seq8304 98.7 2e-15 >seq34972 Length=31405 Score = 192 bits (212), Expect = 9e-44 Identities = 514/769 (67%), Gaps = 20/769 (3%) Strand=Plus/Minus Query 204844 GGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGCACA 204902 |||||||||||||||||| || |||||| | || || | || || ||||| | Sbjct 2768 GGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTAC-TCGATAATTTCTGTGCAGA 2710 Query 204903 AGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCT 204962 ||| | | |||| | |||| || ||| ||||| ||| | ||| |||| ||| | Sbjct 2709 GGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTT 2650 Query 204963 TGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCACAAT 205021 |||||| |||| | ||| | || | || |||| || ||| | || | | |||||| Sbjct 2649 TGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCG-ATAACGGCGTGCCACAAC 2591 Query 205022 TCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGC 205078 | |||||| |||| |||| | || |||| || ||| || ||||| ||| Sbjct 2590 TGCTGAGCCTTCACCACGCGCTTGA---ACTTCCCCTGCTTCTCATAGGAGGTGTAGAGC 2534 Query 205079 GCCACAAAGTCAGAACCGTA-CACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAG 205137 | || || || | ||| || ||||||||| || | |||||||||||||| Sbjct 2533 TTTTCGAACTCCTCCCCCCAGCAC-TCATCCAGCCCTGGGCACTCGTTGGGACACATCAG 2475 Query 205138 AGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTA 205197 |||||| || | | | ||| |||| ||| ||||||||| ||||||||||||||| Sbjct 2474 AGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTA 2415 Query 205198 AAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGC 205257 || || || | ||| || | || | ||| |||||| || | ||||| ||| Sbjct 2414 GAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAG-GAAGT 2356 Query 205258 CGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCC 205316 | | | |||||||||||| ||||| | ||| ||| | || ||||| |||||||| | Sbjct 2355 CAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGC 2296 Query 205317 CACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGT 205376 | |||||||| || || | | | |||| |||||| |||||| || || | |||| Sbjct 2295 CGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGT 2236 Query 205377 TGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTTCAGCCCTCACGTTGGAGATGGC 205434 ||| | | ||||| |||| | |||| || | || | || | | | || || Sbjct 2235 TGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT--GTTCTGATGCAGCTTATCGC 2178 Query 205435 CGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGAT 205494 | | || || || || | | |||| ||| ||||||| | | ||| ||| ||| || Sbjct 2177 CACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAAT 2118 Query 205495 GCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGT 205553 |||| ||||| ||||| || | | ||| |||| | ||||| |||| || Sbjct 2117 GCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC-CTGT 2059 Query 205554 TGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 |||| || |||| ||||||||||||| ||||||| |||| | |||||| Sbjct 2058 TGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTC 2010 Score = 161 bits (178), Expect = 2e-34 Identities = 291/419 (69%), Gaps = 5/419 (1%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| || || ||||||| | ||||| |||| Sbjct 3429 CCTGAATGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACA-GCCCT 3371 Query 204159 ACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217 || |||| || | ||| || ||||||| ||||||||| |||||||| || ||| Sbjct 3370 CTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACC 3311 Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277 | |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| Sbjct 3310 CTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGG 3251 Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337 |||||| |||||||||||| || ||||| |||||| ||| | ||| |||| | | Sbjct 3250 GCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCG 3191 Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 | | | |||||| ||||||| ||| | |||| ||| ||||||||||| Sbjct 3190 ATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCG 3131 Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456 |||| | |||||| | ||||| || ||| ||||||| || ||| || ||| Sbjct 3130 TACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTC 3072 Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAA 204515 | ||||||| ||| || ||| |||| | ||| |||| ||| ||||| |||| Sbjct 3071 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAA 3013 >seq8304 Length=64587 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | | Sbjct 5228 TGCTGACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCT 5287 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | |||||||||||| | ||||| |||||| || ||||||||||| |||| || Sbjct 5288 CAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGA 5347 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 5348 GCAGACTGTTCCTCACACC 5366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794477270555360