Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq27301 145 9e-30 seq15835 140 4e-28 seq33424 138 1e-27 seq12594 125 8e-24 >seq27301 Length=2015 Score = 145 bits (160), Expect = 9e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||| ||||| | || |||||| ||||| |||||||||| Sbjct 1876 TGCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 1817 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || |||||||| || || || |||| ||||||||||| | | Sbjct 1816 AGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAG 1757 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| |||||| |||| | | | ||||| || | |||| Sbjct 1756 GGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCA 1697 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| || || ||||| || || |||||||| ||||||||| Sbjct 1696 CCTCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 1644 >seq15835 Length=21870 Score = 140 bits (154), Expect = 4e-28 Identities = 174/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||||| || ||||| | || |||||| ||||| |||||||| | Sbjct 6240 TGCCTCCTCTCAGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 6181 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 6180 AGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 6121 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | |||||||| | || | Sbjct 6120 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGA 6061 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCAC 46600 | || | |||||||| ||||| || || || || |||||||| ||||| ||||||| Sbjct 6060 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTTGCAC 6004 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| ||| ||||| | || |||||||||||| |||||||||| Sbjct 265 TGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 206 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || |||| | |||||| || | | Sbjct 205 AGAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGG 146 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| || | || | | |||||||| | || | Sbjct 145 GAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGA 86 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 85 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || ||||| | ||| |||||| ||||| |||||||||| Sbjct 6696 TGCCACCCCTCAGACGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 6637 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 6636 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 6577 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| || | || | | |||||||| | ||| | Sbjct 6576 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAA 6517 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 6516 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6468 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || || | ||||| ||| ||||| | || |||||| ||||| ||||| Sbjct 6929 TTATTGACCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTA 6870 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || ||||||||||| || || |||| | |||||| || Sbjct 6869 GTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATC 6810 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||| | || | | |||||||| | Sbjct 6809 TGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGG 6750 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 6749 CTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6696 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || ||||| | ||| || || ||||| |||||||||| Sbjct 6468 TGCCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGG 6409 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 6408 AGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 6349 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| |||||| ||| | || | | |||||||| | || | Sbjct 6348 GAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGA 6289 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 6288 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6240 >seq33424 Length=445 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||| ||||| | || |||||| ||||| || ||||||| Sbjct 128 TGCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGG 187 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || |||||||| || || || |||| ||||||||||| | | Sbjct 188 AGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAG 247 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCC 46543 | | || ||| ||||| |||||| ||||| ||| || | |||| || | ||| Sbjct 248 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGCTGTCACTGGGCTCC 306 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || ||||| || || |||||||| ||||| Sbjct 307 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 >seq12594 Length=11963 Score = 125 bits (138), Expect = 8e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||| | ||| ||||| | || |||||| ||||| |||||||||| Sbjct 444 TGCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 385 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || |||||||| || || || |||| ||||||||||| | | Sbjct 384 AGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAG 325 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCC 46543 | | || ||| ||||| |||||| ||||| ||| || | |||| || | ||| Sbjct 324 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGCTGTCACTGGGCTCC 266 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 || |||| |||||||| || || ||||| ||| Sbjct 265 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTT 233 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465 || ||||| || |||||||| || ||||| |||| || |||||||| || || || ||| Sbjct 631 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGATC 572 Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525 | ||||||||||| | || | || ||||| ||| |||||| ||||| ||| | Sbjct 571 AGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTTTC 513 Query 46526 ACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 | | |||| || | ||||| |||| |||||||| || || ||||| || || ||||| Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 46585 GATTTGCAT 46593 ||| ||||| Sbjct 452 GATCTGCAT 444 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| |||| || |||||||| || || || Sbjct 221 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAG 162 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | || |||||| ||| |||||| ||||| | Sbjct 161 ATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTT 102 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| || | ||||| |||| |||||||| || || || || || || || Sbjct 101 TCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTCACG 42 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 41 AAGATCTGCAT 31 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||| ||||| | || |||||| ||||| ||||||||||| Sbjct 764 CCTCCTCTGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 705 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || || || |||| ||||||||||| | || Sbjct 704 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 645 Query 46487 ACGCTCTCCTT 46497 | || ||||| Sbjct 644 ATGCCTTCCTT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564756491871120