Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15835 167 2e-36 seq33424 136 4e-27 seq12594 132 5e-26 seq27301 129 6e-25 seq59523 104 2e-17 seq61326 91.5 1e-13 seq53140 89.7 5e-13 seq25594 84.2 2e-11 >seq15835 Length=21870 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| ||| | Sbjct 37 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGC 96 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| |||||||| || |||||| | || || Sbjct 97 GACACTATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 155 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 156 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 215 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || || ||| | ||||||||| |||| || ||| Sbjct 216 CATCCAAAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 264 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| ||| | Sbjct 6696 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 6755 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 6756 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 6814 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 6815 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 6874 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | ||||||||| |||| ||||| Sbjct 6875 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGG 6922 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| ||| | Sbjct 6240 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 6299 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | || |||| || || || || |||||| | ||||| Sbjct 6300 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 6359 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 6360 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAAC 6419 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| | || |||||| |||| || ||| Sbjct 6420 ATCCAGAAAGAATCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 6467 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| |||||||| | || |||||| | Sbjct 6008 AAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCC 6067 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | | | |||| | || | || |||| ||||| || || |||||| | | Sbjct 6068 CAGCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 6126 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || ||||| |||||||| || | ||||||||| |||| Sbjct 6127 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTCTCTGACT 6186 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| | || || ||| | || |||||| ||||||| ||| Sbjct 6187 ACAACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGTCTGAGAGGAGGC 6239 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 6468 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 6527 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || |||||| | || || Sbjct 6528 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 6586 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 6587 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 6646 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| | || |||||| |||| || ||| Sbjct 6647 CATCCAGAAGGAGTCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 6695 >seq33424 Length=445 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || || ||| ||| Sbjct 356 ATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 297 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||||| | | ||||| | || | || |||| ||||||||||| || || | ||||| Sbjct 296 GACAGCATTGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCA 238 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| |||| ||||||||| |||||| || Sbjct 237 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTATAA 178 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| | ||||| ||| | ||||| ||| Sbjct 177 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCAGAGGAGGC 129 >seq12594 Length=11963 Score = 132 bits (146), Expect = 5e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 38261 AACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGC 38319 ||| || || || || ||||||||| | || || ||| ||| |||||| | | ||||| Sbjct 233 AACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGTGACAGCATTGAAAACG- 291 Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 | || | || |||| ||||||||||| || || | ||||| ||||| || || | | Sbjct 292 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCAGCAGCGTCTGATCTTTG 351 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | || || |||||||| |||| ||||||||| ||||||||||||||| ||||| | | Sbjct 352 CTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCA 411 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || ||| | ||||| ||| | ||||| ||| Sbjct 412 CCCTCCATCTTGTGCTCCGTCTCAGAGGAGGC 443 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || ||| ||| Sbjct 31 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 90 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | ||||| | || | || |||| || || ||||| || || | ||||| Sbjct 91 GACTCAATTGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 149 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 150 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGTCGCACCCTCTCCGACTACAA 209 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| || ||| | || || || Sbjct 210 CATCCAGAAAGAATCCACCCTCCA 233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| || || | || || || |||||||| || | ||||||| Sbjct 644 TCCCTCCAGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCC 703 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 || ||||||||||||||| ||||| | || || ||| | ||||| ||| | ||||| | Sbjct 704 TCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCATCTTGTGCTCCGTCTCAGAGGAG 763 Query 38470 G 38470 | Sbjct 764 G 764 >seq27301 Length=2015 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || || || ||||||||| | || || ||| || Sbjct 1645 AAAATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCTTGGAGGTGGAGCCC 1704 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | |||| || |||| || || || || || || | ||| Sbjct 1705 AGTGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGAC 1764 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || || || |||||||| |||| ||||||||| ||||||| Sbjct 1765 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTAC 1824 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || ||| | ||||| ||| | ||||| ||| Sbjct 1825 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCAGAGGAGGC 1875 >seq59523 Length=898 Score = 104 bits (114), Expect = 2e-17 Identities = 101/126 (80%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || |||||||||||||||||||||||||| || || |||| |||||| Sbjct 491 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCAAAGAACGCCAACACGTGAG 433 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | | ||||| ||| ||| || | ||||||| || |||||||||||| | Sbjct 432 AGATGAAGTACCTCTCGTCGTCCTTC-AGAG-TCCCAGTTCTGCAGGTCCTTGGACAGAT 375 Query 133394 CCACCT 133399 |||||| Sbjct 374 CCACCT 369 >seq61326 Length=556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||| ||||||| ||||| || ||||| | ||||||||||||||| || || Sbjct 184 GTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 243 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || |||| |||||| |||||||||||| || | ||| ||||| ||| Sbjct 244 ACCATAGAAACACCTCGCCTCCGTCACCTGCACTTCCTGTGTGAAGCGCTCCACC 298 >seq53140 Length=1855 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||| |||||| || | ||||| || ||||| | ||||||||||||||| || Sbjct 294 GTAGGTGTTGATGAGAAGGCTG--TACATCTCTGAGTGGATGTTCTCCATGGCGATCTGG 351 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || || |||| |||||| |||||||||||| || | ||| ||||| ||| Sbjct 352 AAACCATAGAAACACCTCGCCTCCGTCACCTGCACTTCCTGTGTGAAGCGCTCCACC 408 >seq25594 Length=9440 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||| ||| || |||||| | | || | ||| ||||| || || | || | Sbjct 4738 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 4797 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 |||||||||| ||||| ||||| ||| || ||||||| |||||| || || || |||| Sbjct 4798 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAG 4857 Query 133037 CCACCAGGCGCTCGCC 133052 |||| | ||||| || Sbjct 4858 CCACAATTCGCTCCCC 4873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499746365175040