Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq52199 105 5e-17 seq47038 95.1 9e-14 >seq52199 Length=10077 Score = 105 bits (116), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 |||||| ||||| || || ||||| || | |||||||| ||||||||||| || || Sbjct 3778 TTGTCTACCTTTTTGTCCAGCCCATAGGCGATGGCAGCAGCTGTTGGTTCATTGATGATA 3719 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | || |||||| || |||| ||| | || |||||||| ||||| || | ||| || || Sbjct 3718 CGCAGAACATTGAGGCCAGAGATTGTGCCAGCATCTTTTGTGGCCTGGCGTTGGGAGTCA 3659 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || ||||| || ||||| || |||| Sbjct 3658 TTGAAGTAGGCAGGTACCGTAATTACAGCAT 3628 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || ||| | || | |||||||||||||| ||||| Sbjct 2950 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTGGCTGCATCTCCGATCAGCC 2891 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || | ||||| || | ||||| || || || | || ||||| || || |||| Sbjct 2890 TCTCCGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTTCCTTGGTCGTTGGCAA 2831 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| ||| | ||||| ||||| | | || || || | ||| | Sbjct 2830 TGATTTCAACTTTGCCATGTTGGAACACACCAACACAGGAATAGGTGGTCCCGAGATCGA 2771 Query 518703 TACCAA 518708 |||||| Sbjct 2770 TACCAA 2765 >seq47038 Length=16033 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| || || ||||| | |||||||||||| || || || || || | | ||| Sbjct 8003 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 7944 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 7943 TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 7884 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | || |||| Sbjct 7883 GCAGGCACAGTCACGACTGCAT 7862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777437793609436