Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq34972 215 6e-51 seq8304 102 1e-16 >seq34972 Length=31405 Score = 215 bits (238), Expect = 6e-51 Identities = 653/991 (66%), Gaps = 27/991 (3%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 3395 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 3336 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||||| ||| | Sbjct 3335 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 3276 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 3275 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 3216 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 3215 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 3157 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCA-CCCCTTG-GGACGTGGGAGAAC 106136 | | || ||| | |||||||| || | || || | |||||| ||| |||||| | Sbjct 3156 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGAC--GGGAGAGC 3100 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | | | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 3099 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 3040 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 |||| || |||| || ||||| || ||||| | || || || | || || | Sbjct 3039 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 2980 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 2979 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 2920 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||| | || |||||| ||| || ||||| | || | || ||||| || Sbjct 2919 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGT 2860 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGA----AGTTTTTCATAATCAAAAGTG 106432 | | ||| ||| || || | || | || || ||||||| | | |||||||| Sbjct 2859 TCAAATTCTTG---ACGATTACTTTGGTCACA-GACGCCAGTTTTTTAAAGTCAAAAGTC 2804 Query 106433 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 106492 || ||| |||| ||| | || || ||||| |||| |||||| || || | Sbjct 2803 CG---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACC 2747 Query 106493 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCC 106552 ||||| | |||||||| | ||||||||| || | |||| ||| || || ||| Sbjct 2746 TCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCC 2687 Query 106553 AAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 106612 | ||||| |||||| ||||| ||||||| || || ||||| |||||||| ||||| || Sbjct 2686 AGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCA 2627 Query 106613 GTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTT 106671 || || ||||| |||| || || || | |||| || | | | || || | | || Sbjct 2626 GTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTT 2568 Query 106672 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 106730 | | |||| | ||| || |||||||| ||| |||||||| ||| | || | Sbjct 2567 GAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACT 2509 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAAC 106788 | || ||||| || || ||||| | |||||||| | || | | ||| || Sbjct 2508 CATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCAC 2451 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 | ||||||||| ||||| || ||||||||| Sbjct 2450 TCTCTTCATGAACAGGTCGGGGATCCACAGG 2420 >seq8304 Length=64587 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| ||||||||||| || || || |||| ||| || || || || Sbjct 6185 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 6244 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 6245 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 6304 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 || || ||||| || | || || || | |||||| Sbjct 6305 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589477797119440