Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12594 138 3e-27 seq33424 136 9e-27 seq15835 125 2e-23 seq27301 122 2e-22 >seq12594 Length=11963 Score = 138 bits (152), Expect = 3e-27 Identities = 153/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||||| || || |||||||| || || || ||||| |||| || || Sbjct 437 TCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 378 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || || ||||| || || || ||||||||||| ||||| Sbjct 377 GCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCC 318 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || ||||||||| |||||| |||| ||| ||||| || Sbjct 317 CTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTC---ACTGGGCTCCACCTC 261 Query 195096 AAGGGTAACCGTCTTTCCTGTCA 195118 ||||| | |||||||| |||| Sbjct 260 CAGGGTGATGGTCTTTCCAGTCA 238 Score = 116 bits (128), Expect = 8e-21 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||| ||||| || || ||||| |||| || || | || ||||| |||||| Sbjct 233 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGC 174 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || || || ||||||||||| ||||| || || || || || || Sbjct 173 TTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 114 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||||||||| ||||| | ||| ||| ||||| || ||||| | |||||||| Sbjct 113 GCCTTGACGTTTTCAATTGAGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCA 57 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 56 GTAAGGGTCTTCACGAAGATCTGCAT 31 Score = 109 bits (120), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 194952 TTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011 ||| || || || || |||| || || | || ||||| |||||||| || || ||||| Sbjct 632 TTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGAT 573 Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071 || || || ||||||||||| |||||||| || || || || || ||||||||| || Sbjct 572 CAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTC 513 Query 195072 AATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 |||| |||| ||| ||||| || ||||| | |||||||| |||| || || || Sbjct 512 AATGCTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCAC 456 Query 195129 GAACACTTGCAT 195140 || | ||||| Sbjct 455 AAAGATCTGCAT 444 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||||| || ||||||||||| || || || ||||| |||| || || Sbjct 759 TCTGAGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 700 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || || || ||||||||||| ||||| Sbjct 699 GCGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCC 640 Query 195039 TTCTTT 195044 ||| || Sbjct 639 TTCCTT 634 >seq33424 Length=445 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||||| || || |||||||| || || || || || |||| || || Sbjct 135 TCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGT 194 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || || ||||| || || || ||||||||||| ||||| Sbjct 195 GCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCC 254 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||||| || || ||||||||| |||||| |||| ||| ||||| || Sbjct 255 CTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGCTGTC---ACTGGGCTCCACCTC 311 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| |||| || || || || | ||||| Sbjct 312 CAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 >seq15835 Length=21870 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| ||||| || ||||| |||| || || | |||||||| Sbjct 245 ACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 186 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||||||||| || Sbjct 185 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 126 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||||||||| ||||| || || || ||||| | ||||| Sbjct 125 ATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTG 66 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 65 CCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 6904 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 6845 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||| ||||| || Sbjct 6844 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 6785 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||||||||| || || || ||||| | ||||| Sbjct 6784 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTG 6725 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 6724 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6696 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || || || ||||||||||| || || || ||||| || | || || Sbjct 6233 TCTCAGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 6174 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || |||||||| |||||||| Sbjct 6173 GCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 6114 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| ||||| || || || ||| ||||||||||||||||| Sbjct 6113 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC 6072 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| || || || ||||| |||| || || | |||||||| Sbjct 6676 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 6617 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||| ||||| || Sbjct 6616 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 6557 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||||||||||||||| ||| || || ||||| | ||||| Sbjct 6556 ATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTG 6497 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 6496 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6468 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || || ||||| || || ||||| |||| || || | |||||||| Sbjct 6448 ACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCC 6389 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| ||||||||||| || || || Sbjct 6388 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 6329 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || || || ||||| | ||||| Sbjct 6328 ATCTTGGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTG 6269 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 6268 CCAGTGAGGGTCTTAACGAAGATCTGCAT 6240 >seq27301 Length=2015 Score = 122 bits (134), Expect = 2e-22 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||||| || || |||||||| || || || ||||| |||| || || Sbjct 1869 TCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1810 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || || ||||| || || || ||||||||||| ||||| Sbjct 1809 GCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCC 1750 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| || || || || || ||||| || ||||||||||| ||| ||||| || Sbjct 1749 TTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTC 1693 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||| | ||||| || |||| || || || || | ||||||| Sbjct 1692 CAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTT 1646 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || ||||| || || || ||||||||||| ||||| |||||||| || || || | Sbjct 2015 CCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATCTTGGCC 1956 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||||| ||| ||| ||||| || ||||| | |||||||| ||| Sbjct 1955 TTGACATTTTCAATGGAGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTC 1899 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 1898 AGGGTCTTCACAAAGATCTGCAT 1876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108512035818002