Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq52199 113 4e-19 seq47038 104 2e-16 seq26184 96.9 3e-14 >seq52199 Length=10077 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || |||||||| ||||| || || || ||||||| Sbjct 3628 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAACGCCAGGCCACAAAAGATG 3687 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||||| ||||| ||||||||||| || |||||||| Sbjct 3688 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 3747 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 3748 TCGCCTATGGGCTGGACAAA 3767 >seq47038 Length=16033 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| || || || || |||||||| || || || || || ||||||| Sbjct 7862 ATGCAGTCGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 7921 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| |||||||| |||||||| ||||| || || ||||||||||| Sbjct 7922 CAGGCACCATTTCTGGGCTTAATGTCCTTCGTATCATCAACGAGCCGACTGCTGCTGCTA 7981 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || |||||| Sbjct 7982 TCGCGTACGGCCTGGATAAA 8001 >seq26184 Length=38773 Score = 96.9 bits (106), Expect = 3e-14 Identities = 370/575 (64%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 ||||||| ||||| || || | | || ||||| || |||| | || ||||| | Sbjct 30065 CGAGGGCACGCTTTGAGGAGCTTAATGCAGAGCTCTTCAGGGGAACACTGGAGCCAGTCG 30124 Query 552073 AACAAGT--TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGT 552130 | |||| || || || | ||| | || || ||||| | ||||| || || || || Sbjct 30125 AG-AAGTCCTTGCAG-GACGCCAAGCTGGACAAGTCCAAGATCCATGAGATCGTCCTGGT 30182 Query 552131 TGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTA 552189 || || || |||||||| || ||||| | | | || || | | |||||| || | Sbjct 30183 CGGCGGCTCCACAAGAATCCCCAAAATCCAGAAGCTCTTGCAGGACCT-TTTCAACGGCA 30241 Query 552190 AAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | || | || | || | || |||||||| ||||| || || ||||| || | || | Sbjct 30242 GAGAACTGAACAAGAGCATCAACCCAGATGAAGCTGTGGCGTACGGTGCAGCGGTCCAGG 30301 Query 552250 CAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTA 552309 | || || || || | ||| || || | || || | | || | || || Sbjct 30302 CTGCCATCCTCATGGGCGACACTTCAGAGAACGTCCAGGATCTGCTGCTGCTGGACGTGG 30361 Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 |||| || || || || | || || || || || ||||||| ||| ||| | ||| Sbjct 30362 CTCCCCTGTCACTGGGCATCGAGACCGTAGGCGGAGTTATGACGCCTCTAATCAAACGAA 30421 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || || || || | || | | | | || || |||||||| || ||||| | | Sbjct 30422 ACACCACCATCCCCTCCAAGCAGACCCAGATCTTCTCCACGTATTCGGACAATCAGCCAG 30481 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 ||| ||||| | | || ||||| ||| | || || || || || | | | Sbjct 30482 GTGTGCTGATTCAGGTGTACGAGGGAGAGAGAGCCATGACCAAGGACAACAACCTCTTGG 30541 Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | | ||| | | | |||||| ||||||||||| || || ||||| || | || || | Sbjct 30542 GCAAGTTTGAGCTTGCAGGTATCCCTCCTGCTCCCCGAGGCGTACCACAGGTGGAGGTCA 30601 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 | ||||| ||||| ||||| || ||| |||| ||| Sbjct 30602 CCTTCGACATCGACGCCAACGGCATTCTGAACGTG 30636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025688959110940