Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq15835 105 5e-18 >seq15835 Length=21870 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | ||| ||||| || || ||||| || ||||| |||| | Sbjct 263 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 204 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 203 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 144 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || ||| || | || | |||||| | || || Sbjct 143 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACC 84 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 83 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 36 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| |||||||||||||| || || ||||| |||| | Sbjct 6466 CCACCCCTCAGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAG 6407 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| |||| | ||| || || || ||| Sbjct 6406 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 6347 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| | || | ||||| | || || Sbjct 6346 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACC 6287 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 6286 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6239 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| |||||||| || || || || ||||| |||| | Sbjct 6694 CCACCCCTCAGACGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 6635 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 6634 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 6575 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || ||| || | || | ||||| | ||| || Sbjct 6574 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 6515 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 6514 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || | ||| || || || || || || || ||||| || | | Sbjct 6238 CCTCCTCTCAGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 6179 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| |||| | ||| || || || ||| Sbjct 6178 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 6119 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || || | || | ||||| | || || Sbjct 6118 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 6059 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 |||||||||| || ||||| || | || || ||||| ||||||||| || Sbjct 6058 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTTT 6008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| || || || || || ||||| |||| | Sbjct 6922 CCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6863 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 6862 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 6803 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || || | || | ||||| | || || Sbjct 6802 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 6743 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || || || ||||||||| Sbjct 6742 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395948989369542