Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq34972 233 4e-56 seq25594 91.5 3e-13 seq8304 91.5 3e-13 >seq34972 Length=31405 Score = 233 bits (258), Expect = 4e-56 Identities = 630/946 (67%), Gaps = 27/946 (3%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| || ||||| || ||||| || | | |||| |||| || || ||||| ||||| Sbjct 2768 GGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAGAG 2709 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||||||| |||||||||| ||||| | | || || ||| | ||| ||||| || Sbjct 2708 GTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 2649 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || |||||| || ||| | | | | || || ||| | | Sbjct 2648 GTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTG 2589 Query 221893 TCTG-GCGCTCACCGTCCTCTTGA-CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || ||||| | ||||| || | |||| ||| ||||| ||| |||||| Sbjct 2588 -CTGAGCCTTCACCACGCGCTTGAACTTC-CCCTG---CTTCTCATAGGAGGTGTAGAGC 2534 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | || |||| || || | ||| ||||| ||||| ||| | ||||||||||||| Sbjct 2533 TTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCTGGGCACTCGTTGGGACACATCAGA 2474 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| || |||| | || |||| |||||| ||||| ||||||||||| | | Sbjct 2473 GACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAG 2414 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || || || |||| | |||||||||| ||| |||| ||| | || |||| || ||| Sbjct 2413 AAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 2354 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | ||| |||||||| |||||||| || | ||| | || || |||| ||||||||| Sbjct 2353 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGCCG 2294 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| || || | || |||| | | | || | || || | |||||| Sbjct 2293 CCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTG 2234 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCT----CAGGTTACTGGCA 222304 || ||||||||||| ||||| || || ||| | || ||| ||| | || Sbjct 2233 GAGTTGCCGTTGGTGCCGGCGATGTA-GCTCC-CCGTTGTTCTGATGCAGCTTA-TCGC- 2178 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 || ||||| || ||||| ||| ||||| | |||||| ||| || ||||| Sbjct 2177 --CACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAA 2120 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 ||||| || || ||| || || | | ||||| || || |||| ||| | || Sbjct 2119 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 2060 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 ||| | ||||| || |||||||| |||||| || || | | |||| ||| Sbjct 2059 TTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGG 2000 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 | ||||||||| | | || | |||||| | ||| ||| | || ||||||| Sbjct 1999 TTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATG 1940 Query 222545 TACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| ||| || | || |||| || || || || | |||||| || Sbjct 1939 AGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT-GATCT--TCAACAGGTAGGACCGC 1883 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646 |||||||||||||| || ||| ||||| ||| ||| |||||| || Sbjct 1882 TCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCG 1838 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| | |||| || || ||| || | Sbjct 3392 CATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 3333 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | | ||||||| Sbjct 3332 CTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 3273 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 3272 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 3213 Query 221245 GTT 221247 ||| Sbjct 3212 GTT 3210 >seq25594 Length=9440 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || ||||| || |||||||||||||| ||| ||| || || || Sbjct 4873 GGGGAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 4814 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||| ||||||||| ||| | |||| | |||| || || || ||||||||||| Sbjct 4813 GCCATCTTTTGGCTCAAGAAGA-GAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCT 4755 Query 25992 CATCAGCAGGGACGAGG 26008 || || |||| |||| Sbjct 4754 GATTAGTCGGGATGAGG 4738 >seq8304 Length=64587 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||||||||| | ||| | ||| ||| | | || ||| Sbjct 5233 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 5292 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| Sbjct 5293 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 5352 Query 221243 CTGTT 221247 ||||| Sbjct 5353 CTGTT 5357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928052890144640