Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq52199 98.7 6e-15 seq27301 95.1 8e-14 seq15835 95.1 8e-14 seq7747 93.3 3e-13 >seq52199 Length=10077 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || || || || || ||||| || ||||| || || || ||||||| Sbjct 3628 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAACGCCAGGCCACAAAAGATG 3687 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || |||||| | ||||| || |||||||||||||| || || Sbjct 3688 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 3747 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || || || Sbjct 3748 TCGCCTATGGGCTGGACAAAAA 3769 >seq27301 Length=2015 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| |||||||| || || || || | || || || | || || | | Sbjct 1865 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1806 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || |||||||||||||| || ||||| || || || ||||| || |||||| Sbjct 1805 CCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCC 1746 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGT 480733 || || || ||||| ||||||| |||||| || ||| || | | | | ||| ||| Sbjct 1745 TTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAA-GGT 1687 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||| || || || || Sbjct 1686 GATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTG 1651 >seq15835 Length=21870 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || ||| || || | || || || | || || | | Sbjct 6685 AGACGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 6626 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | || ||||| || ||||| |||||| Sbjct 6625 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 6566 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| ||| || ||||| || || || || | || ||||| Sbjct 6565 TTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTG 6506 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||||||||| || || Sbjct 6505 ATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 6471 >seq7747 Length=34316 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || || || || |||| || || | ||| | || || Sbjct 19789 TGAAGGAGAGAGAGCCATGACCAAGGACAACAACATCCTGGGCAAGTTTGAGCTGACCGG 19730 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| || ||||| ||||| || || ||||| |||||||| || Sbjct 19729 TATTCCACCTGCTCCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 19670 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 19669 TGGCATTCTCAATGTGTCTGC 19649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265253513724488