Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq28315 100 3e-16 >seq28315 Length=4498 Score = 100 bits (110), Expect = 3e-16 Identities = 256/387 (66%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 160575 TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTC 160634 || ||||| | ||||| |||| ||| | ||||| || || |||||| || Sbjct 354 TCAGTCTCCATGCTGTTTCTCCCGTTGAGGGCCTTCAGAGCCTGAACAATCTCTCCATTG 413 Query 160635 GTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAG 160693 || |||| || ||||| || || || ||||| || |||| |||| | || | || Sbjct 414 GTTTTGATGGGGAAGTCTGTCCCACAGGTGTTTAGCAGGTACCTCCACTGGACGTGTGAG 473 Query 160694 GTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACAC 160753 || | |||| |||||||||| | |||||||| || || ||| || || || || Sbjct 474 TTCAGG-AGGTTTTTCATGCAATTCAAGTCTGCCTGAACCCGCGACCATGAGGCATATAC 532 Query 160754 TACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCAC 160813 || | |||| | ||||| | ||| || ||| || || || ||| || |||| Sbjct 533 AACTCTTTCTAACCTGCTGGCAATAAACACATTAGGAAAGCAAGAAGTAATTGCCTCCAC 592 Query 160814 CGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGG 160873 ||| || |||| | || ||||||| || | || || | |||||| || Sbjct 593 GGCCTTCTGAAATTCCTTAGGGGATTTCTGGTCCACATGTATACAGTAGATGTTCTGCGG 652 Query 160874 CGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGA 160933 | ||| | || | || | | |||||||||||| ||||| | ||||||||| || || Sbjct 653 AGTGTAAACAGCTCGTAGAAGTCGCTCGAACATCTCAATCTTGTCATGGATCACCATGGA 712 Query 160934 GTAGGCTATCGGAAACTCGGTCTCCTC 160960 |||||| || ||||| || ||||||| Sbjct 713 GTAGGCAATGGGAAAATCCTTCTCCTC 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576727077340560