Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq34972 215 6e-51 seq8304 111 2e-19 >seq34972 Length=31405 Score = 215 bits (238), Expect = 6e-51 Identities = 653/991 (66%), Gaps = 27/991 (3%) Strand=Plus/Plus Query 75703 CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTGGTCAATGGTCTCTT 75760 ||||||||| || ||||| ||||||||| | || ||| | | || | |||||||| Sbjct 2420 CCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAGGAC--TGGTCTCTG 2477 Query 75761 TTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCT 75819 | ||||| || || ||||| || || || | ||| |||||||| ||| || Sbjct 2478 ATGTGTCCCAACGAGTGCCCAGGGCTGGATGAGTGCTGGGGG-GAGGAGTTCGAAAAGCT 2536 Query 75820 CTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-T 75878 |||||| ||||| || |||| | ||| ||| || || | | | ||| | Sbjct 2537 CTACACCTCCTATGAGAAGCAGGGGAAGTTCAA-GCGCGTGGTGAAGGCTCAGCAGTTGT 2595 Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938 || | || || || | || ||||| || ||||| || ||||| ||||| ||||| || | Sbjct 2596 GGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACG 2655 Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998 | || |||| |||||| |||||| ||||| |||| || |||||| | || || |||| Sbjct 2656 CCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCA 2715 Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058 | |||||| | |||||||| | |||||| || || |||||| |||| ||||| | Sbjct 2716 CAGAAATTATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGCAATCTGGCCTCAATTG 2775 Query 76059 CCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT----TCAT 76114 | || | ||| |||| ||| || |||||||| | | ||||||| || | Sbjct 2776 CGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAAAAACTGGCGTC-T 2831 Query 76115 GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCC 76174 | | || | || || ||| ||| | ||| ||||| || | || | ||||| Sbjct 2832 GTGACCAAAGTAATCGT---CAAGAATTTGAACAAGGTCATCGAAATTAACTACTATCCA 2888 Query 76175 GTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGT 76234 || ||| |||||| || | ||| ||||| || ||||| | || || |||||| Sbjct 2889 GTGCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGT 2948 Query 76235 CTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATG 76294 | ||||||| || || | || ||| | || || | || || || | || Sbjct 2949 TTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTG 3008 Query 76295 AATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCT 76354 ||| || ||||| || |||| || ||||| ||||||||||||| || || |||| Sbjct 3009 AATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCC 3068 Query 76355 GAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCC-CAAGGGG-TGCTTC 76412 | | | || |||| ||||| | | || ||||||| || |||||| | || | Sbjct 3069 GCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCG--TCAGCAAGGGCATCCTGC 3126 Query 76413 AGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGGGATGTTCTCAAGGA 76470 ||| || |||||||| | ||| || | | |||| | |||||| | | || ||||| Sbjct 3127 AGTACGACATGTGGGA-GAAGAAGCCCACCG-AACTGCTGGACTGGAAGCTGCTGAAGGA 3184 Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530 ||| | || | | ||||| || || |||| || ||||| || ||||| Sbjct 3185 GAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTC 3244 Query 76531 CACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCT 76590 |||||| || ||| |||| || || || | | | ||| | ||||| | ||||||||| Sbjct 3245 CACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACAC 3304 Query 76591 GAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAA 76650 | || |||| | || |||||| || |||||| || || |||| ||||| | Sbjct 3305 CCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGAC 3364 Query 76651 GAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 | ||| || || ||| | |||| |||||| Sbjct 3365 GGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 3395 >seq8304 Length=64587 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | || || || |||| ||||| || || || || ||||| ||||| |||||| Sbjct 6340 GTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAG 6281 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 || || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| Sbjct 6280 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 6221 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||||||| || ||||||||||| ||| |||||| Sbjct 6220 TGCACGGAGATCGTAGAGTACACAAGTAAAGATGAG 6185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596060979673280