Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8808 149 8e-30 seq34972 138 1e-26 seq49922 125 9e-23 seq21258 125 9e-23 seq66458 122 1e-21 seq8304 104 3e-16 seq13720 102 1e-15 seq25594 87.8 2e-11 seq1374 86.0 8e-11 >seq8808 Length=7153 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 1567 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCTCTGGAGGTGA 1626 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| | ||| ||| ||||||| | ||||||| || | | Sbjct 1627 TGGTGGAGCGCTTGTTGTAGTGAGTCAGCCGGGAGGCCTCGCCGGCGATGCGCTCAAAGA 1686 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 1687 TGTCGCTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 1746 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 1747 GGACCTGCTTCAGCACTTTGTA 1768 >seq34972 Length=31405 Score = 138 bits (152), Expect = 1e-26 Identities = 208/290 (72%), Gaps = 18/290 (6%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || ||||||| ||| | || | |||||||| |||| ||||| Sbjct 2294 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTT 2235 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGG 1630177 ||| | |||||||||||| || | |||| || | | | ||| ||| | || Sbjct 2234 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTAT---CGC 2178 Query 1630178 CAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGA 1630237 || | ||||| || ||||| || ||||||||||| ||||| || || ||||||||||| | Sbjct 2177 CACA-CCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAA 2119 Query 1630238 TGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGG 1630292 |||| ||||| |||| | |||||| | | || ||||| ||| || | || | | Sbjct 2118 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTG 2060 Query 1630293 GTGCGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 || || || ||||||||||||||||| | || ||||||| ||| Sbjct 2059 TTG----GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 2014 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| ||| || ||||||| | ||| || | Sbjct 3381 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 3322 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| | | ||| | |||| |||||| Sbjct 3321 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 3262 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| | |||| || || ||| | || || Sbjct 3261 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 3202 Query 1627475 CGTG 1627478 |||| Sbjct 3201 CGTG 3198 Score = 87.8 bits (96), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1628378 AGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCA 1628437 ||||||| | ||| || || |||| ||||| | || |||||||| | | || Sbjct 2514 AGCACTCATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCT 2455 Query 1628438 CCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGT 1628497 || | | ||| || ||||| ||||||| |||| || ||||| | || | | Sbjct 2454 CCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCT 2395 Query 1628498 TCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACG 1628557 ||||||||| ||| |||||| || || || || |||| | | |||||||||||| | Sbjct 2394 GCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGG 2335 Query 1628558 GCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||||||| ||||||||| || | |||| |||||| Sbjct 2334 GCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCC 2292 >seq49922 Length=3371 Score = 125 bits (138), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||| || |||||||||||||| | | ||| ||| Sbjct 1681 GCCAGCTCACCGGGCAGCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAAGTGATGGTG 1740 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| |||||| | ||||||| || | |||||| Sbjct 1741 GAGCGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCG 1800 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| |||||||||| ||| | ||| ||||||||| ||| ||||| ||| Sbjct 1801 CCCACAAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACC 1860 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 1861 TGCTTCATCACCTTGTA 1877 >seq21258 Length=4163 Score = 125 bits (138), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||| || |||||||||||||| | | ||| ||| Sbjct 1548 GCCAGCTCACCGGGCAGCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAAGTGATGGTG 1607 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||||||||| |||||| | ||||||| || | |||||| Sbjct 1608 GAGCGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCG 1667 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| |||||||||| ||| | ||| ||||||||| ||| ||||| ||| Sbjct 1668 CCCACAAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACC 1727 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 1728 TGCTTCATCACCTTGTA 1744 >seq66458 Length=1455 Score = 122 bits (134), Expect = 1e-21 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||| ||||| ||||||||||| | | | ||| ||| |||||||| |||| || Sbjct 419 CAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGTGAGC 360 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||||||| |||||| | ||||||| || | |||||| | || || |||||||||| Sbjct 359 CAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCTCACGAAGGAGTTCATGAT 300 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| |||| |||| |||||||||||||||||| | ||| ||||| Sbjct 299 GCCCATAGCCTTGGAGGAGGTGCCGGTGTCGGGGTGCACCTGCTTCATCACTTTGTA 243 >seq8304 Length=64587 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 6207 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 6266 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| |||||| ||| |||||| ||| | Sbjct 6267 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 6326 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 6327 ATGGCGTACCACACCTG 6343 >seq13720 Length=42310 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 19495 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 19554 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 19555 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 19605 >seq25594 Length=9440 Score = 87.8 bits (96), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 || || ||||| |||| |||||| ||| ||||| ||||| || || | ||||||| Sbjct 4740 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 4799 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||||||||| ||| ||| ||||| ||||||||||| || || ||||| Sbjct 4800 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAA 4855 >seq1374 Length=80986 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| |||| | ||| | |||||| | ||||||||| Sbjct 75759 GCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 75700 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||| | ||||| || |||||||| Sbjct 75699 ATGATTAAAGGCAAAACCCCGGAGGAGATCAGGAAGACGTTCAACATCAA 75650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101541896231302