Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8808 197 2e-44 seq49922 174 2e-37 seq21258 174 2e-37 seq1120 136 6e-26 seq34972 120 5e-21 seq66458 113 7e-19 seq13720 93.3 7e-13 seq8304 93.3 7e-13 seq25594 89.7 8e-12 seq61326 87.8 3e-11 seq37993 87.8 3e-11 >seq8808 Length=7153 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || || |||||| ||||||| |||||| ||| Sbjct 1528 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCCAGCTCGCCGGGCA 1587 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 1588 GCAGCAGGCGGACGGCGGTCTGGATCTCTCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 1647 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| ||| ||||||| | ||||||| || | |||||| |||| || ||||||| Sbjct 1648 GAGTCAGCCGGGAGGCCTCGCCGGCGATGCGCTCAAAGATGTCGCTGACGAAGGAGTTCA 1707 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 1708 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACTTTGT 1767 Query 1485710 AAAC 1485713 | || Sbjct 1768 ACAC 1771 >seq49922 Length=3371 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 1637 TGTACTTGGTCACAGCCTTGGTTCCCTCAGATACGGCGTGCTTTGCCAGCTCACCGGGCA 1696 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || |||||||||||||| | || ||| ||| ||||||||| | Sbjct 1697 GCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAAGTGATGGTGGAGCGCTTGTTGTAGT 1756 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | ||||||| || | |||||| ||||| ||||||| Sbjct 1757 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCCCACAAAGGAGTTCA 1816 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| ||||| |||||||| | |||||||| Sbjct 1817 TGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACCTGCTTCATCACCTTGT 1876 Query 1485710 AAAC 1485713 | || Sbjct 1877 ACAC 1880 >seq21258 Length=4163 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 1504 TGTACTTGGTCACAGCCTTGGTTCCCTCAGACACGGCGTGCTTTGCCAGCTCACCGGGCA 1563 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || |||||||||||||| | || ||| ||| ||||||||| | Sbjct 1564 GCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAAGTGATGGTGGAGCGCTTGTTGTAGT 1623 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | ||||||| || | |||||| ||||| ||||||| Sbjct 1624 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCCCACAAAGGAGTTCA 1683 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| ||||| |||||||| | |||||||| Sbjct 1684 TGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACCTGCTTCATCACCTTGT 1743 Query 1485710 AAAC 1485713 | || Sbjct 1744 ACAC 1747 >seq1120 Length=186844 Score = 136 bits (150), Expect = 6e-26 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 7942 TGTACTTGGTGACAGCTTTGGTTCCCTCGGACACGGCGTGTTTGGCCAGCTCCCCGGGCA 7883 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||||||||| | ||| | | || ||| ||| ||| || || || | Sbjct 7882 GCAGCAGCCTCACGGCGGTCTGCACCTCTCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 7824 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||||||| |||| || || | || |||||| || || |||||| Sbjct 7823 TGAGCCAGCCGGGACGCCTCGGTGGCGATCCGCTCAAACAGGTCGTTCACGAAGGAGTTC 7764 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | | |||| |||||| ||| | || ||||| Sbjct 7763 ATGATGCTCATGGCTCGGCTGGAAATGCCCGTGTCCGCATGAACCTG 7717 >seq34972 Length=31405 Score = 120 bits (132), Expect = 5e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || || ||||||| ||| | || | |||||||| || | ||||| Sbjct 2294 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTT 2235 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGG 2073652 ||| | |||||||||||| || | |||| |||| | | ||| ||| | || Sbjct 2234 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTAT---CGC 2178 Query 2073653 CAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGA 2073712 || | ||||| || ||||| | ||||||||||| ||||| | |||||||| ||||| | Sbjct 2177 CACA-CCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAA 2119 Query 2073713 TGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 |||| ||||| |||| | |||||| | | ||| ||||| Sbjct 2118 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCA 2079 Score = 98.7 bits (108), Expect = 2e-14 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 2071791 GCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCAC 2071850 |||||| | ||| || || |||| || || | || |||||||| || || | Sbjct 2513 GCACTCATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTC 2454 Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| | ||| ||||||||| ||||||||||||| || || || | || | | Sbjct 2453 CACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTG 2394 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 ||||||||| ||| |||||| || || || || |||| | | |||||||||||| || Sbjct 2393 CTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGG 2334 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||| ||||||||| || | |||| |||||| Sbjct 2333 CTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCC 2292 Score = 96.9 bits (106), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || | | || ||| | | || ||| || ||||||| | ||| || | Sbjct 3381 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 3322 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| || | ||| |||||||||||||| ||| | | ||| | |||| |||||| Sbjct 3321 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 3262 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 |||||||||| | || | |||||||||||| | |||| ||||| ||| | || || Sbjct 3261 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 3202 Query 2069744 CGT 2069746 ||| Sbjct 3201 CGT 3199 >seq66458 Length=1455 Score = 113 bits (124), Expect = 7e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1485534 CAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGC 1485593 |||||| ||||| ||||||||||| | || | ||| ||| |||||||| | | || Sbjct 419 CAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGTGAGC 360 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 ||| ||| |||||| | ||||||| || | |||||| | || || ||||||||||| Sbjct 359 CAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCTCACGAAGGAGTTCATGAT 300 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||| | ||| |||| |||| |||||||||||||||||| | ||| ||||| || Sbjct 299 GCCCATAGCCTTGGAGGAGGTGCCGGTGTCGGGGTGCACCTGCTTCATCACTTTGTACAC 240 Score = 107 bits (118), Expect = 3e-17 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 535 TGTACTTGGTCACGGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGAGCA 476 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 | |||||| ||||| ||||||||||| | || | ||| ||| Sbjct 475 GCAGCAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTG 432 >seq13720 Length=42310 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 19495 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 19554 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||| ||||| || ||||| ||||||| |||||| ||||||| Sbjct 19555 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 19605 >seq8304 Length=64587 Score = 93.3 bits (102), Expect = 7e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||| ||| || | |||||||||| |||||||||||||| || Sbjct 6207 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 6266 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||||||||||| |||||||| |||| || || ||| |||||| || | Sbjct 6267 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 6326 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 6327 ATGGCGTACCA 6337 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTC 2069675 ||| || ||||||||||| | ||| |||||||||||||| ||| |||| | ||| Sbjct 5238 AAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATGGACTC 5297 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 | |||||||||||||||| | || | || ||||||||| | |||| |||||| Sbjct 5298 GTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAG 5351 >seq25594 Length=9440 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| | || ||||| |||| |||||| || ||||| ||||| || || | || Sbjct 4736 CACCT-CATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCT 4794 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||||||||||||| ||| ||| ||||| ||||||||||| || || |||| Sbjct 4795 TCTTGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAA 4854 Query 794459 A 794459 | Sbjct 4855 A 4855 >seq61326 Length=556 Score = 87.8 bits (96), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 794589 CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGAT 794648 ||||| |||||||| ||||||||| ||| |||||||||||||||| || |||||||| Sbjct 178 CTTGATGTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGAT 237 Query 794649 CTGGAAGCCATAAAAGCA 794666 |||||| ||||| || || Sbjct 238 CTGGAAACCATAGAAACA 255 >seq37993 Length=4384 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 1485576 GCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1485635 ||||||||| | | ||||| ||| |||||| | ||||||| | | |||||| Sbjct 7 GCGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTTTAAGATGTCGCC 66 Query 1485636 GACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||||||||||| ||| | |||| ||||||||| ||| ||||| ||||| Sbjct 67 CACAAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCGGTGTCTGGGTGGACCTG 126 Query 1485696 CTTGAGCACCTTGTAAAC 1485713 ||| | ||||||||| || Sbjct 127 CTTCATCACCTTGTACAC 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908991016692434