Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq52199 107 1e-17 seq47038 95.1 9e-14 >seq52199 Length=10077 Score = 107 bits (118), Expect = 1e-17 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 |||||| ||||| || || ||||| || | |||||||| ||||||||||| || || Sbjct 3778 TTGTCTACCTTTTTGTCCAGCCCATAGGCGATGGCAGCAGCTGTTGGTTCATTGATGATA 3719 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | || |||||| || |||| ||| | || |||||||| ||||| || | ||| || || Sbjct 3718 CGCAGAACATTGAGGCCAGAGATTGTGCCAGCATCTTTTGTGGCCTGGCGTTGGGAGTCA 3659 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || ||||| || ||||| || |||| |||| Sbjct 3658 TTGAAGTAGGCAGGTACCGTAATTACAGCAT-TGTT 3624 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | ||| | || | |||||||||||||| ||||| Sbjct 2950 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTGGCTGCATCTCCGATCAGCC 2891 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || | ||||| || | ||||| || || || | || ||||| || || |||| Sbjct 2890 TCTCCGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTTCCTTGGTCGTTGGCAA 2831 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| ||| | ||||| ||||| | | || || || | ||| | Sbjct 2830 TGATTTCAACTTTGCCATGTTGGAACACACCAACACAGGAATAGGTGGTCCCGAGATCGA 2771 Query 282870 TACCAA 282875 |||||| Sbjct 2770 TACCAA 2765 >seq47038 Length=16033 Score = 95.1 bits (104), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| || || ||||| | |||||||||||| || || || || || | | ||| Sbjct 8003 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 7944 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 7943 TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 7884 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | || |||| |||| Sbjct 7883 GCAGGCACAGTCACGACTGCAT-TGTT 7858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737281773638556