Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq53294 118 1e-21 >seq53294 Length=28476 Score = 118 bits (130), Expect = 1e-21 Identities = 357/538 (66%), Gaps = 25/538 (5%) Strand=Plus/Minus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 |||||| || | || || ||| |||||| |||||| ||||| ||||| ||| ||| | Sbjct 11746 GGCCAGCTCCTTGGGCGAGGTGAAGTCGTCCACGTGGATGAAGGCGTCCCCCTGGATAAA 11687 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 || ||||| |||| | | | || || || | || |||| || | ||||| Sbjct 11686 GTTCTCGTAGTTCTGCCGGGGCGGGCCCAGAACCACCGGCACCGTCCCGAC----AGAGA 11631 Query 177065 TCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGAT 177120 ||| || ||||| || || || |||||| |||| | |||||||||||| || || | Sbjct 11630 GCGGGTTGTACAGTTTCTCAGTGATGTAGTCCTTGTGGATGGAGTTCTCAAAAGCCAGGT 11571 Query 177121 AGAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTAC 177178 |||| || ||| | ||| || |||| | |||| | || | || || || || | Sbjct 11570 AGAACTTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCCGAGATGTACTCCCCGAA 11513 Query 177179 TACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCT 177238 | | ||||| | || | || ||||| || ||||| ||||||| || | Sbjct 11512 GGCTTGTCCGTACGCGTGAACCTCGATGTGCTTGTACAGCTCATTGTAGTATTTCACCCG 11453 Query 177239 CACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAAC 177298 ||||||||| | |||||| ||||| |||| |||||| | | |||| | ||||| || | Sbjct 11452 CACGTGGTCCTGGTTCCAGTTGCTCACGATCCAGCAGATCAGCTTG-TTTTTGCTGG-GC 11395 Query 177299 GGGATTCGATACTAAT-GCAGTGTCTCTG-AGCGTTAGTGATCCATAGGGCACGTGAATA 177356 |||| | || || || | | ||| || | || ||||| ||||| | ||| Sbjct 11394 GGGACAAAGTCCTCATCGCCCT-CCGCTGCTACG--ATGGACCCATAAGGCACTTCAATG 11338 Query 177357 TCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC---TTGTTTG 177413 || | || | | ||| | | || |||||||| | ||| || || || | | | Sbjct 11337 TCAGCATCCTGACGGTAATTGAGAGTCAGATTGAACATGTTCTCGATCCCGGGCAGCTGG 11278 Query 177414 AAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 ||| | || || ||||| || ||||||||||||| |||||| || |||| ||||| Sbjct 11277 GAGGAG-TGCGAC--GGCGACTCCAAGTTCATCCATACCCACTTCTGGAAGGATGGTC 11223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577938843337600