Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq34972 145 7e-30 seq15835 111 1e-19 seq27301 89.7 5e-13 seq12594 82.4 7e-11 >seq34972 Length=31405 Score = 145 bits (160), Expect = 7e-30 Identities = 942/1497 (63%), Gaps = 52/1497 (3%) Strand=Plus/Minus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | || | ||||| || ||||| | || ||||| |||| || || Sbjct 3295 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 3236 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCA 147055 ||||| |||| || || || | || |||| | | || || || ||||||| Sbjct 3235 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGT--GGATGGCGATCTTCTCCTTCA 3178 Query 147056 A-AGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA 147112 || || ||||||| || ||| | |||| || | ||||||||||||||| || | Sbjct 3177 GCAGCTT-CCAGTCCAGCAGTTCG--GTGGGCTTCTTCTCCCACATGTCGTACTGCAGGA 3121 Query 147113 CTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAAT 147171 || ||| ||||| ||| ||| |||| |||| ||| || | ||| ||| Sbjct 3120 TGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGC 3062 Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || ||||| ||||| || || | | ||| |||| ||| |||||| | || || | Sbjct 3061 TCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGC 3002 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGG 147291 || |||| ||| ||| | || ||||| || | |||||||| |||||||| ||| Sbjct 3001 TGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGG 2942 Query 147292 ATACCGACGCCGATAGGTCGATGCTTTTCGTTGC-----TGCGCTTCGCGCTCGCTATGG 147346 | || | || || || | || | |||| | ||||||| || | | Sbjct 2941 ACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACT-----G 2887 Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTT 147406 |||||| ||| || || | |||||| | || || | ||||| || | | Sbjct 2886 GATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGACG 2827 Query 147407 TGAGTTTCTCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATA 147465 ||||| | || ||| |||||| || | |||||| || ||| | || || Sbjct 2826 CCAGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGTGACGTAC--AT--GTTGAGCGCAATT 2771 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || ||||||||||| || || ||| ||| | | |||||| | ||||| | ||| Sbjct 2770 GAGGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAG 2711 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 ||||||||| | || ||| |||| ||| || || ||||| |||| ||||| |||||| Sbjct 2710 AGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCT 2651 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG---C 147642 ||| | |||||||| || ||| || || || | | |||||| || | Sbjct 2650 TTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCAC 2594 Query 147643 AGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 | | ||| || |||| ||| || | |||| || || || ||| | Sbjct 2593 AACTGCTGAGCCTTCACCACGC-GCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAG 2535 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | || ||||| || || |||| || | || || || |||| | ||||||||||| Sbjct 2534 CTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCTGGGCACTCGTTGGGACACATCAG 2475 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 ||||| |||| | || | ||| ||||| || || | |||||| |||| Sbjct 2474 AGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTA 2415 Query 147822 CATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACG 147879 | ||| || | || || ||| ||||| || |||| || | | || | | Sbjct 2414 GAAAAGGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAG 2357 Query 147880 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTT 147936 | | | ||||||||||||||| || | ||| | ||| | || ||| | | || Sbjct 2356 TCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTCTCTTGTTG 2297 Query 147937 CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG 147996 |||||||||||||| | || || ||||||| | || | || |||||| | | ||| Sbjct 2296 CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCG 2237 Query 147997 CTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTA 148056 | | ||||||||||| ||| | ||| || | || | |||| ||| Sbjct 2236 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTC-----TGATGCAGCTTA 2182 Query 148057 ACGCCA-----ATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGT 148111 ||||| || || ||| | | || || ||| ||||| | || || || Sbjct 2181 TCGCCACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGT 2122 Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAA 148171 | ||||| ||||||||||||| ||| | | | |||| || || ||| || || Sbjct 2121 AAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCC 2062 Query 148172 TCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCA 148231 | ||||| || ||| || ||||| ||||| || ||| | || | || || Sbjct 2061 TGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCA 2002 Query 148232 TGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCA 148291 | ||||||||||| || | |||||||| ||| || || | | || | || Sbjct 2001 GGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCA 1942 Query 148292 TGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTT 148351 ||||||||||||| ||||| ||||| |||| ||||||||| | || || | Sbjct 1941 TGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCT 1882 Query 148352 CGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | || || ||| | || ||| | ||||| |||||| ||| || |||||||| Sbjct 1881 CCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCG 1825 >seq15835 Length=21870 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| ||||| |||||||||||| | ||| || | Sbjct 251 CGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCA 192 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || ||||||||||| Sbjct 191 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTG 132 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | ||| ||| | ||||| || |||| || | Sbjct 131 TCCTGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATG 72 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || || || | ||| ||||||||| || Sbjct 71 GTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATGCCT 33 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || |||||||||||| | ||| || | Sbjct 6682 CGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 6623 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| |||||||| || |||||||| || Sbjct 6622 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 6563 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | || ||| | || || || || | || | Sbjct 6562 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATG 6503 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | ||| ||||||||| Sbjct 6502 GTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || |||||||||||| | ||| || | Sbjct 6910 CGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 6851 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| |||||||| || |||||||| || Sbjct 6850 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 6791 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | || | Sbjct 6790 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATG 6731 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | ||| ||||||||| Sbjct 6730 GTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6695 >seq27301 Length=2015 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || ||||| ||||| || || | | Sbjct 1841 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCA 1782 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| |||||||| ||||| || || ||| | Sbjct 1781 AAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCTTTGACA 1722 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | |||||||| || | || | || || || ||||| || || Sbjct 1721 TTTTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTC 1662 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1661 ACAAAGATCTGCAT 1648 >seq12594 Length=11963 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| | ||| || ||||| ||||| || || | | Sbjct 224 GATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCA 165 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| ||||| || ||||| || || || | Sbjct 164 AAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACG 105 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | | || | |||||||| || | || | || || ||||| || || || Sbjct 104 TTTTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTC 45 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 44 ACGAAGATCTGCATGCCT 27 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||| ||||| || || | | Sbjct 731 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCA 672 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTAT 132029 |||| |||||||| || |||||||| |||||||| |||| Sbjct 671 AAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTAT 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476204853206160