Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq67474 105 2e-19 seq63118 104 7e-19 seq55753 100 9e-18 seq28401 98.7 3e-17 seq27131 98.7 3e-17 seq22753 98.7 3e-17 seq18060 98.7 3e-17 seq10641 98.7 3e-17 seq7126 98.7 3e-17 seq3721 98.7 3e-17 seq62929 84.2 7e-13 >seq67474 Length=1200 Score = 105 bits (116), Expect = 2e-19 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 2763 TTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 ||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 580 TTTATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGT 639 Query 2823 TCAACCCCGGGCTTCAGC 2840 || | |||||| ||| || Sbjct 640 TCGATCCCGGGTTTCGGC 657 >seq63118 Length=6823 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6319 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6378 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6379 CCGGGTTTCGGC 6390 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 5938 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGATTCAATC 5997 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 5998 CTGGGTTT 6005 >seq55753 Length=3116 Score = 100 bits (110), Expect = 9e-18 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 2762 GTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 |||| || || ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2740 GTTTCTGAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTG 2681 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||| | |||||| ||| || Sbjct 2680 GTTCGATCCCGGGTTTCGGC 2661 Score = 91.5 bits (100), Expect = 5e-15 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 2762 GTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 |||| || || ||| |||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 3115 GTTTTTGTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAACGTCCCTG 3056 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||| | || ||| ||| || Sbjct 3055 GTTCGATCCTGGGTTTCGGC 3036 >seq28401 Length=12654 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3338 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3279 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3278 CCGGGTTTCGGC 3267 >seq27131 Length=5934 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2382 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2441 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2442 CCGGGTTTCGGC 2453 >seq22753 Length=6293 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 6127 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 6068 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 6067 CCGGGTTTCGGC 6056 >seq18060 Length=74509 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 27043 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 27102 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 27103 CCGGGTTTCGGC 27114 >seq10641 Length=10354 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4365 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4306 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4305 CCGGGTTTCGGC 4294 >seq7126 Length=48212 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 25446 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 25505 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 25506 CCGGGTTTCGGC 25517 >seq3721 Length=77600 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 24633 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 24692 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 24693 CCGGGTTTCGGC 24704 >seq62929 Length=611 Score = 84.2 bits (92), Expect = 7e-13 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 558 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15837776148870