Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq17722 147 3e-30 >seq17722 Length=45798 Score = 147 bits (162), Expect = 3e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || || | ||| || | |||||||||||| || | |||||||| || ||||| || Sbjct 8221 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 8162 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 ||||| || ||||| || || || | |||||| ||||| ||||| ||||| |||||| | Sbjct 8161 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 8102 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||| ||||| |||||| ||||||| || ||||| |||||| || |||||| || Sbjct 8101 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGTCAGGTCTGC 8046 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTT 147335 |||| |||||||||||||||||||||||| || ||||| || ||||||||||| || Sbjct 6468 GTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTC 6409 Query 147336 TCTGTGCGAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || | | ||||| || | ||| || || | ||||||| | ||||||||| || Sbjct 6408 TCGATCTGTGAAGC---CCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAAT 6352 Query 147393 GCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 ||| || || || ||||||||||| | || || || ||| Sbjct 6351 CTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCC 6309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582990532718400