Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8808 152 7e-31 seq34972 136 6e-26 seq49922 125 1e-22 seq21258 125 1e-22 seq1120 107 3e-17 seq8304 104 3e-16 seq66458 96.9 5e-14 seq13720 87.8 3e-11 >seq8808 Length=7153 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| ||||| |||| |||| ||| |||| ||||| Sbjct 1768 TACAAAGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCCTCCAAGGCCATG 1715 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||| |||||| | || ||||||| | ||||||| || Sbjct 1714 GGCATCATGAACTCCTTCGTCAGCGACATCTTTGAGCGCATCGCCGGCGAGGCCTCCCGG 1655 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||| | | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 1654 CTGACTCACTACAACAAGCGCTCCACCATCACCTCCAGAGAGATCCAGACCGCCGTCCGC 1595 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| || || |||||||||| Sbjct 1594 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 1546 >seq34972 Length=31405 Score = 136 bits (150), Expect = 6e-26 Identities = 207/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | ||||||||||| || || || || | | Sbjct 2005 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGC 2064 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||| | ||| ||||| ||||| || | Sbjct 2065 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACG 2124 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| ||||||||||| | ||||| || |||||| | || Sbjct 2125 ACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGGAATCGGTGTGGC----G 2180 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||| ||| | | |||| |||| | || |||||||||||| | |||||||| Sbjct 2181 ATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGG 2240 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || |||||||| | |||| ||| ||||||| || |||||||||||| || Sbjct 2241 GTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGC 2294 Score = 95.1 bits (104), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | |||||||||||| | || | |||||||||||||||| |||| | Sbjct 3217 TGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 3276 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||| | | ||| |||||||||||||| ||| | || ||||| || || ||| | | Sbjct 3277 TCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCG 3336 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| || ||| |||| | || || | | || ||||||| Sbjct 3337 TCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 3381 >seq49922 Length=3371 Score = 125 bits (138), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| ||||| |||| |||| ||| ||| ||||| Sbjct 1877 TACAAGGTGATGAAGCAGGTCCACCCAGACACCGG-----CATC-TCCTCCAAAGCCATG 1824 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| |||||| | || ||||||| | |||||| || Sbjct 1823 GGCATCATGAACTCCTTTGTGGGCGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 1764 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | |||||||||||||| || ||| Sbjct 1763 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACCGCTGTCCGC 1704 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||| | ||||||||| || ||||| |||| Sbjct 1703 CTGCTGCTGCCCGGTGAGCTGGCAAAGCACGCCGTATCTGAGGGAACCA 1655 >seq21258 Length=4163 Score = 125 bits (138), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| ||||| |||| |||| ||| ||| ||||| Sbjct 1744 TACAAGGTGATGAAGCAGGTCCACCCAGACACCGG-----CATC-TCCTCCAAAGCCATG 1691 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| |||||| | || ||||||| | |||||| || Sbjct 1690 GGCATCATGAACTCCTTTGTGGGCGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 1631 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | |||||||||||||| || ||| Sbjct 1630 CTGGCTCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACCGCTGTCCGC 1571 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||| | ||||||||| || ||||| |||| Sbjct 1570 CTGCTGCTGCCCGGTGAGCTGGCAAAGCACGCCGTGTCTGAGGGAACCA 1522 >seq1120 Length=186844 Score = 107 bits (118), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || || |||||| || | || || |||| ||||||||| Sbjct 7751 CCATGAGCATCATGAACTCCTTCGTGAACGACCTGTTTGAGCGGATCGCCACCGAGGCGT 7810 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | ||| || ||| ||| ||| || | ||| | |||||||||| Sbjct 7811 CCCGGCTGGCTCAGTACAATAAACGCTCCACCATCACCAGCAGAGAGGTGCAGACCGCCG 7870 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||||| |||||||| |||||||| |||| Sbjct 7871 TGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGAACCA 7924 >seq8304 Length=64587 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | || | ||| ||||||||||| |||||| ||||| Sbjct 6343 CAGGTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTAC 6284 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || |||||||||||||| |||||||||| | | ||| Sbjct 6283 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 6224 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| |||||||| Sbjct 6223 CTGTGCACGGAGATCGT 6207 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| |||| | Sbjct 5350 TGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATCCTGGGCAACAACGAGTCCA 5291 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| ||| |||||||||||||| ||| | ||||||||||| || ||| Sbjct 5290 TTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 5238 >seq66458 Length=1455 Score = 96.9 bits (106), Expect = 5e-14 Identities = 132/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||||||| |||| || ||||| |||| | ||| Sbjct 243 TACAAAGTGATGAAGCAGGTGCACCCCGACACCGG-----CA-CCTCCTCCAAGGCTATG 296 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| | || ||||||| | |||||| || Sbjct 297 GGCATCATGAACTCCTTCGTGAGCGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 356 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | ||||||||||| ||||| ||| Sbjct 357 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTCCGC 416 Query 725094 CTG 725096 ||| Sbjct 417 CTG 419 >seq13720 Length=42310 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| ||||||| ||||| || ||| |||||||| |||||||||| Sbjct 19605 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGA-CCGCGGCAGGTCATGGTGTCGCA 19547 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || ||||| |||| |||||| |||| |||||||||||||| ||| Sbjct 19546 CAGCAGAGCCAAGTGACGGTAGTTGACGTAGGAACCGTCAAAGGAGATGACG 19495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171232605937372