Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq34972 401 9e-107 seq25594 120 4e-22 seq8304 98.7 1e-15 >seq34972 Length=31405 Score = 401 bits (444), Expect = 9e-107 Identities = 1261/1941 (65%), Gaps = 17/1941 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| ||||||||| | || | || ||||| || || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || || || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || | ||||| ||| || Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 3158 Query 68893 TCAGATGG-TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951 || | || | | | | ||| | ||||| || || || || || || | || || Sbjct 3157 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 3099 Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011 || || || || || || || | || || || || || ||||| | || | Sbjct 3098 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 3039 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071 || || || | ||||| || | |||| || || || ||| || ||||| || Sbjct 3038 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 2979 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 ||| | | || || || ||||| ||||| || || || ||||| || || || || || Sbjct 2978 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 2919 Query 69132 TCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 69191 | ||| || || |||| ||||| || | ||||| || ||||| || || | || || Sbjct 2918 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTT 2859 Query 69192 AAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-T 69250 | ||| ||| | |||||| ||| | ||||| ||| ||||| |||| | Sbjct 2858 CAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAA-GTCCGCT 2800 Query 69251 CTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAG 69307 | | || |||| || || || | || || ||||| || || |||||||||| Sbjct 2799 CCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGT 2740 Query 69308 AATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTT 69367 | | || | || || ||||| || || || || | ||||| || |||||||| | Sbjct 2739 GGCTGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 2680 Query 69368 GCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 | || || ||||| |||| |||||||| ||||| || || | || || |||||||| Sbjct 2679 GTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTG 2620 Query 69428 TCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCT 69487 |||| || ||||||| | | ||| | | ||| || | ||| |||| | | Sbjct 2619 TCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCC 2560 Query 69488 TCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || || ||||| || || ||| |||||| || || ||||| ||||||| | Sbjct 2559 CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCC 2500 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 | || || || || |||||||||| ||||| | || | || |||| ||||| | Sbjct 2499 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 2440 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | || ||||| ||||| || | || ||| || || |||| ||| | || || ||||| Sbjct 2439 ACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTTTCCG 2381 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || || || || | | || | ||||| || || || || || Sbjct 2380 GTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATG 2321 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | |||| |||| || || || ||||| || | ||| | || ||||| || || Sbjct 2320 GCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 2261 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 ||||||||||| || | | || || || || || || || || | || || || || Sbjct 2260 ACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCC 2201 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 ||| | || || || | | ||| ||||| || || ||| ||||| || || Sbjct 2200 GTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCG 2141 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||| ||||| || || || || ||||| || ||| ||||| || || || Sbjct 2140 CATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 2081 Query 69967 CAGCTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| || | ||| | ||||| || || || | || || || ||||| || Sbjct 2080 CAGCTGGACAGCTGTGGCCTGT-TGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGT 2022 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || ||||| ||||| || ||||| |||| || || ||| || || Sbjct 2021 GAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTG 1962 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | | || | ||| | ||| ||||| ||||| || || ||| || || Sbjct 1961 GATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGAT 1902 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||||| || |||||||| || || || || ||||||| || || ||||| Sbjct 1901 CTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 1842 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC---CATAAC 70262 ||| |||| || | || || || || || | | | ||| || || | | | Sbjct 1841 GTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGTCTC 1782 Query 70263 AGTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATC 70322 | ||||| || || || | ||||| || || | |||||| | | || Sbjct 1781 CTT---GGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAGGTC 1725 Query 70323 TTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCT 70382 ||||| || || || || | || || || || ||||| | ||||| | ||| || | Sbjct 1724 CTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCG 1665 Query 70383 GGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGC 70442 || || || || || ||||| || || | || || ||| || | || || ||||| Sbjct 1664 TGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGCAGC 1605 Query 70443 TAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGC 70502 | ||| || | || | || || || ||| | || | || || || || ||||||| Sbjct 1604 CAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCATGGT 1545 Query 70503 TATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGA 70562 || | | ||||| | ||| || | |||||| || || || | || || ||| | Sbjct 1544 GATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCGACA 1485 Query 70563 TGTAATTTTATCAAACATAAC 70583 || ||||| || ||||| || Sbjct 1484 GGTGATTTTGTCGAACATGAC 1464 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||| ||||| || || |||||| || | || || || || || || | Sbjct 4203 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 4144 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || || |||||| | || || | || || ||||| || | ||| ||| Sbjct 4143 TCAGGGACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCT 4084 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||||| || ||| | | ||| || | ||||||||||| Sbjct 4083 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 4033 >seq25594 Length=9440 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| | |||||| | ||||| || | || || ||||||||||| || | ||| | Sbjct 4738 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 4797 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||||| |||||||| || || || || ||||||||||| || ||||||||||| | Sbjct 4798 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAG 4857 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||| || Sbjct 4858 CCACAATTCGCTCCCC 4873 >seq8304 Length=64587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || ||||| || ||||||| || |||||||| ||||| || ||||| || Sbjct 6210 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 6269 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || || || ||||| |||| |||||||| || Sbjct 6270 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 6328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686323158729840