Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq52512 109 4e-19 seq11531 104 2e-17 >seq52512 Length=14673 Score = 109 bits (120), Expect = 4e-19 Identities = 102/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| ||||||||||| ||| ||| |||||||||||| |||||| || ||||| | Sbjct 3508 CCAGACGACCTCCAGCTCTGCATTCAGTCGGTCCAGCTTCACAAAGTCGTCTTTGTTGGT 3449 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||| ||||| | ||||| |||||||||| ||||||||||||| ||||| | | Sbjct 3448 GATCTGA-CCTCCAGATTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGGTGG 3390 Query 77430 TCACACC 77436 ||||||| Sbjct 3389 TCACACC 3383 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| |||||| ||||||| ||||||| |||||||||||| || |||||||| | Sbjct 3291 CACCGTTGATCGTGAACTTGCTGTCGGTGTAGAGGACCAGCTTCTTTATGTTGTTCTCTT 3232 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | ||||||||| Sbjct 3231 TGGCTTGTTCCAGCGCTTTGCAGGCAGCCTGG 3200 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| ||||| ||||||||||| || ||| || | Sbjct 2157 CTCCTCTGAAGAACGCCCAGGCATCTTTCTCTGACGCAAACTTCTTGAAAGAGGCAGCGG 2098 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | |||||||| || ||||||||||||||||||| Sbjct 2097 GAAATTTGTCCACCTGGCTCTTACATTCATCCC 2065 >seq11531 Length=4970 Score = 104 bits (114), Expect = 2e-17 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 87316 CATGCAAACAATC---CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAG 87372 |||| ||||| || ||||||||||||| || || ||| |||| || || || || ||| Sbjct 3098 CATGAAAACACTCACCCTGCTCCCAGTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAG 3157 Query 87373 ACTGTCAAGCCAGCAAACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTAT 87432 ||||||| ||||||||||||||||| || | | | | ||| || | ||||||||| Sbjct 3158 ACTGTCAGTCCAGCAAACACAGCACAGGTCAGGCACAAGGCTTGCAGGACAGTGGAGTAT 3217 Query 87433 TCATAGAAGGTCA 87445 || |||||||||| Sbjct 3218 TCGTAGAAGGTCA 3230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397125610477030