Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22]
68,206 sequences; 756,296,653 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq33424 86.0 5e-12
seq27301 86.0 5e-12
>seq33424
Length=445
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || || |||||| | | |||| ||||||| ||||| || ||
Sbjct 160 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 219
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || |||||||| || || || || | |||||||| || ||||||| ||
Sbjct 220 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 279
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | |||| | |||| ||| || || || || || || | || || ||||| ||
Sbjct 280 ACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTC 339
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 340 TTCACAAAGATCTGCAT 356
>seq27301
Length=2015
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| | | |||| ||||||| ||||| || ||
Sbjct 1844 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 1785
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || |||||||| || || || || | || || ||||| ||||||| |||
Sbjct 1784 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCTTTG 1725
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| |||| | ||||| ||| || || || | || || | || || ||||| ||
Sbjct 1724 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTCCCGGTCAGGGTC 1665
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 1664 TTCACAAAGATCTGCAT 1648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424581168765072
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |