Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq34972 215 6e-51 seq8304 102 1e-16 >seq34972 Length=31405 Score = 215 bits (238), Expect = 6e-51 Identities = 653/991 (66%), Gaps = 27/991 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 3395 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 3336 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| | ||| | Sbjct 3335 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 3276 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 3275 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 3216 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 3215 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 3157 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || ||| | ||||||||||| |||| || | |||||| || ||||||| | Sbjct 3156 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CGGGAGAGC 3100 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | | | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 3099 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 3040 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 |||| || |||| || ||||| || ||||| | || || || | || || | Sbjct 3039 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 2980 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 2979 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 2920 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || |||||| ||| || ||||| | || | || ||||| || Sbjct 2919 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGT 2860 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCATGA----AGTTTTTCATAATCAAAAGTG 111205 | | ||| ||| || || | || | || || ||||||| | | |||||||| Sbjct 2859 TCAAATTCTTG---ACGATTACTTTGGTCACA-GACGCCAGTTTTTTAAAGTCAAAAGTC 2804 Query 111206 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 111265 || ||| |||| ||| | || || ||||| |||| |||||| || || | Sbjct 2803 CG---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACC 2747 Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 ||||| | |||||||| | ||||||||| || | |||| ||| || || ||| Sbjct 2746 TCATCGTGGCTGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCC 2687 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | ||||| |||||| |||||| ||||||| || || ||||| |||||||| ||||| || Sbjct 2686 AGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCA 2627 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTT 111444 || || ||||| || | || || || | ||| ||| | | | || || | | || Sbjct 2626 GTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTT 2568 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 111503 | | |||| | ||| || |||||||| ||| |||||||| ||| | || | Sbjct 2567 GAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACT 2509 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAAC 111561 | || ||||| || || ||||| | |||||||| | || | || ||| || Sbjct 2508 CATCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCAC 2451 Query 111562 CCGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | ||||||||| ||||| || ||||||||| Sbjct 2450 TCTCTTCATGAACAGGTCGGGGATCCACAGG 2420 >seq8304 Length=64587 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| ||||||||||| || || || || | ||| || || || || Sbjct 6185 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 6244 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 6245 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 6304 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 || || ||||| |||| || || || | ||| || Sbjct 6305 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627496555617600