Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq34972 181 1e-40 seq8304 86.0 8e-12 >seq34972 Length=31405 Score = 181 bits (200), Expect = 1e-40 Identities = 904/1405 (64%), Gaps = 56/1405 (4%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 3301 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 3242 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 3241 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 3182 Query 118302 TTGAG-AGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 || || ||| ||| |||| | |||| | | | || | || |||||| || |||| Sbjct 3181 TTCAGCAGCTTCC-AGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGC 3125 Query 118359 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 ||||| || | | |||| || || || | | ||||| || ||||| | | | Sbjct 3124 AGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGG 3067 Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476 ||| ||| |||||||||| ||||| ||||| || || | || || || || ||||| Sbjct 3066 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCA 3007 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 || ||||| | | || |||| | || | || || ||||||| | || Sbjct 3006 GCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAAC 2947 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT--CCGAG-CGGTCTCCA 118593 ||||||| || | ||||| || | || | | | || ||||| ||| ||| | | Sbjct 2946 CTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGC---A 2890 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | ||||| | || | ||||| ||| | || | ||| ||| || || || || | Sbjct 2889 CTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCA--- 2833 Query 118654 CATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 118709 || || || ||| ||| |||||| | || ||| |||| ||| | || Sbjct 2832 CA-GACGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGC 2777 Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 || ||||| |||||||| ||||| | |||||| | |||||||| |||||||| Sbjct 2776 GCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTGGCTGGTGTACTCGATAATTTCT 2717 Query 118770 GTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827 ||||| | ||| || ||| | |||||||||| |||| ||| || ||| |||| | Sbjct 2716 GTGCAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 2659 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887 | || || ||||| |||||||||||||| || || || || ||||||| || || || | Sbjct 2658 AGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGT 2599 Query 118888 TCCAGACATCGGC--AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 || ||| | || ||| ||| | ||| ||||| | ||| || || Sbjct 2598 GCC--ACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGT 2541 Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 119005 |||||| ||| ||||| || ||| | ||| |||||||| || | || || Sbjct 2540 GTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCCCTGGGCACTCGTTGGGACA 2481 Query 119006 GAAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 | |||||||| | || | | ||| || | ||||||||| ||||| |||||||| Sbjct 2480 CATCAGAGACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCAC 2423 Query 119064 AGCGCCG-AGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 119121 || |||| |||| || |||| | | ||| || | | || || || | || Sbjct 2422 AG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTTAGCT 2365 Query 119122 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----C 119177 ||| ||||| | | || |||||||| || |||||||||| || | | || | Sbjct 2364 CCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCTGGTC 2305 Query 119178 TTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 | | | || |||||| || || | || ||| ||| | || | ||||| || Sbjct 2304 TCTTGTTG-CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGG 2246 Query 119238 ATGATACCATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--CA 119294 | || || | ||| | ||| || || || ||| | | || | ||||| || Sbjct 2245 ACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT-GTTCTGATGCA 2187 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354 | | || || ||| || ||||| || | || ||||| | ||||| | | | || Sbjct 2186 GCTT--ATCGCCACACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGC 2129 Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 || |||| || || ||||| ||| | || | |||| ||||||||||| |||| Sbjct 2128 GTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGC 2069 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TG 119473 || |||||| || || ||||||||||| || || | |||||| ||||| || | | Sbjct 2068 TGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC-CACTTCTC 2010 Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533 |||| | || ||| ||||| | | | ||| ||||| | ||| || |||| || Sbjct 2009 TGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGA 1950 Query 119534 GACCCGCATAAACATGTATTGGGGT 119558 || | ||| | ||||| || ||| Sbjct 1949 CACTCTCATGAGCATGTGCTGCGGT 1925 >seq8304 Length=64587 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| || || ||||| Sbjct 5266 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 5325 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 5326 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 5357 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| ||| |||||||||| || |||||||||| || || | | | |||||| Sbjct 6185 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 6242 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| |||| || || ||| |||| || || |||||||| |||||||||||||| Sbjct 6243 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 6302 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 || || || || || || | || || || | ||| || Sbjct 6303 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617907937609360