Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq34972 138 1e-27 seq25594 82.4 9e-11 >seq34972 Length=31405 Score = 138 bits (152), Expect = 1e-27 Identities = 644/1004 (64%), Gaps = 25/1004 (2%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || |||| || || ||||| || || || |||||||||||||| ||| | | Sbjct 2406 GACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAG 2465 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGA 104817 | |||||||| | ||||| || || || || || || ||| | ||| ||||| Sbjct 2466 GACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGGATGAGTGCTGGGGG-GAGGA 2524 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG--CGACTGCGACGGTGCCA 104875 ||| ||| || ||||| || ||| ||| ||| | | | ||| |||| Sbjct 2525 GTTCGAAAAGCTCTACACCTCCTATGAG-AAGCAGGGGAAGTTCAAGCGCGT-GGTGAAG 2582 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 ||| | ||||| | || || || |||| || || || ||||| || ||||||||| Sbjct 2583 GCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATG 2642 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 || |||||||||||||| ||| ||||| || ||| ||||| |||| |||||| Sbjct 2643 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCC 2702 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||| ||||| |||||||| | || | || | | |||||| || ||||| || Sbjct 2703 AGCAACCTCTGCACAGAAATTATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGCAAT 2762 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAA 105115 || || ||||| || ||| || ||| || || ||| ||| ||||| | | || Sbjct 2763 CTGGCCTCAATTGCGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAA 2819 Query 105116 AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAAT 105175 ||||| || || ||| || ||| || | |||| || || || | || Sbjct 2820 AAACTGGCGTCTGTGACCAAAGTAATCGTCAAGAATTTGAACAAGGTCATCGAAATTAAC 2879 Query 105176 TTTTACCCCGTTGAGACTG-CTCGTAAA--TCTAATATGAGACACCGTCCAATTGGTCTC 105232 | || || || | | | || ||| || || | | | ||| | || ||||| | Sbjct 2880 TACTATCCAGT---GCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATT 2936 Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 105292 || || || ||| | ||||||| ||||| || || || | || || | | || Sbjct 2937 GGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAG 2996 Query 105293 GCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGT 105352 || || | ||| | || || ||| |||| || |||||||| || |||||||| Sbjct 2997 GCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGC 3056 Query 105353 TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CA 105411 | ||| |||| | | || || || || || | | || ||||| | ||| || Sbjct 3057 TGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCC--CGTCAGCA 3114 Query 105412 AGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGA 105468 |||| | || || | || |||||||| || ||| | ||| | |||| ||| Sbjct 3115 AGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCA--CCGAACTGCTGGACT-GGA 3171 Query 105469 AGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 |||| || ||||| ||| | || | | ||||| || || |||| || | Sbjct 3172 AGCTGCTGAAGGAGAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGA 3231 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 |||| || ||||||||||| || ||| |||| || || || | | | ||| ||||||| | Sbjct 3232 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCA 3291 Query 105588 CGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCG 105647 |||||||| | || |||| | ||||||||| ||| |||||| ||||| Sbjct 3292 GCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGC 3351 Query 105648 TGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | |||| || || ||| | |||| |||||| Sbjct 3352 TCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 3395 >seq25594 Length=9440 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || ||||| || ||||| ||||||||||| || || ||| || Sbjct 4870 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 4811 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 4810 ATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 4751 Query 94924 TCTCGTGACGAGG 94936 ||| || |||| Sbjct 4750 AGTCGGGATGAGG 4738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582763526423440